- 654: data processing, Site none, Wed 09-Dec-2009 13:00:02 MST, october, 2009 info...
found a subtle BUG in cal.co2.q....related to the loaned LI-6262..it's
related to the serial numbers...ie:
fgrep serial cal.co2.q
fun.cal.co2 <- function(zero, span, co2.raw,t.raw,p.raw,h2o.raw,t1,serial)
if(serial==638) {
if(serial==308) {
if(serial==368) {
if(serial==169) {
if(serial==224) {
if(serial==638 | serial == 169) {
if(serial==638 | serial == 169) {
if(serial==638 | serial == 169) {
if(serial==638 | serial == 169) {
if(serial==638 | serial == 169) {
in spots where it says, "if(serial==638 | serial == 169)" it should
say, if(serial==638 | serial == 169 | serial == 224)"
doh!!
also, what's the difference between:
co2.fluxes.q:if(serial==638 || serial == 169 || serial == 224) {
and
cal.co2.q:if(serial==638 | serial == 169) {
?? [has to do with vectors/matrices?]...see:
www4.stat.ncsu.edu/~reich/st810A/R_Cheatsheet.doc
so now i have:
fun.cal.co2 <- function(zero, span, co2.raw,t.raw,p.raw,h2o.raw,t1,serial)
if(serial==638) {
if(serial==308) {
if(serial==368) {
if(serial==169) {
if(serial==224) {
if(serial==638 || serial == 169 || serial == 224) {
if(serial==638 || serial == 169 || serial == 224) {
if(serial==638 || serial == 169 || serial == 224) {
if(serial==638 || serial == 169 || serial == 224) {
if(serial==638 || serial == 169 || serial == 224) {
- 610: equipment purchases, Site none, Tue 20-Jan-2009 09:49:16 MST, equipment purchases Jan 2009.
% purchases in Jan, 2009:
* note the fantom usb disk (Serial # : 288090) is not working. (note,
it turned out to be a problem with the enclosure, not the hard disk
itself).
as a replacement
- bought a 1TB western digital disk (WDE1UBK10000N) from newegg.com
($120)
- also, bought two replacement batteries for the APC UPS's. RBC33 for
the APC BACK-UPs RS 1500VA ($81). Also, bought a new battery for
the Back-UPS 500 (RBC2, $36). order is from buyuptime.com
- 539: equipment purchases, Site none, Wed 12-Mar-2008 16:39:00 MDT, Campbell fix to cr23x and batteries.
March 12, 2008.
The "broken" UCB cr23x logger (sn 6425, W/4M memory) was sent
back to us from campbell.
The diagnosis was:
"LCD was black. Was able to communicate via RS232. Sent new OS and
reset LCD contrast. Bench test, calibrated and ran in environmental
chamber. Did final test and unit is working properly and meeting
specs."
cost of repair = $142.50.
Also, the two batteries were delivered. Details:
1. PS12LA or PS512M Replacement Sealed Rechargeable Battery, 7 Ahr
(this one is to replace the battery running the NCTC logger).
2. two 6V 7A-hr Lead Acid Batteries (these can go inside a cr23x).
- 537: equipment purchases, Site none, Wed 05-Mar-2008 14:08:18 MST, LI-6251 recalibration Info
5 March 2008
the recalibrated/cleaned LI-6251 was returned.
Recal info:
LI-6251 CO2 Analyzer:
Serial Number: IRG1-308
Date: 28 Feb 2008
# recal on 28 Feb 2008 (cell cleaned). new values:
To <- 36.3+273.15 # K
K <- 18572
A <- 0.1379
B <- 1.875E-05
C <- 2.560E-09
R <- 0.0
Po <- 101.3 # kPa
p.slope <- 0.01517 # kPa/mV
p.offset <- 58.912 # kP
* updated the programs:
dir standard.co2.q calculate.co2.q
-rw-rw-r-- 1 sburns 1716 Oct 4 2005 calculate.co2.q
-rw-rw-r-- 1 sburns 2791 Oct 4 2005 standard.co2.q
make .fun.calculate.co2
make .fun.standard.co2
- 523: equipment purchases, Site none, Wed 09-Jan-2008 12:40:18 MST, hard disk for urquell
* note, in Oct 2007 purchased a new hard disk for urquell (to replace
the stack of disks we have had)...details:
Important info about warranty:
"certificate of coverage"
certificate number: 12861517
contract price: $39.99
product manufact model no. serial no. effective date expiration date
hard drive seagate ST373455LC 3LQ1VKF8 10/27/2008 10/27/2010
for repair service call: 866-257-9193
-----------------------------
From:
To:
Subject: Your Newegg.com Invoice# 29639756
Date: Mon, 29 Oct 2007 03:23:50 -0700
Invoice 29639756
Your Sales Order Number:78327026
Order Date:10/27/2007 Order Total: $236.12
Billing Information Shipping Information
Name Sean P Burns Name Sean P Burns Company University of Colorado
Address Dept of Ecology and Ev Biology Ramaley Building, Room N122
Address Dept of Ecology and Ev Biology Ramaley Building, Room N122
City Boulder City Boulder
State CO State CO
Zip Code 80309-0334 Zip Code 80309-0334
Credit Card Type Mastercard Nighttime Telephone #303-492-5796
Your Customer ID 18232846 Day Telephone #
Shipping Method UPS Ground Invoice Date 10/28/2007 11:30:53 AM
Item Description Quantity Unit Price Extended Price
NOTE EXT_WARRANTY:043069 FOR #22-148-280 1 $0.00 $0.00
22-148-280 HD 73.4G|ST 15K 16M 80P ST373455LC 1 $189.99 $189.99
This item is serviced by the SeaGate. Please call 800 -732-4283 for service.
SNET-043069 2 Year Service Net Replacement Plan 1 $39.99 $39.99
Subtotal
$229.98
Tax
$0.00
Shipping and Handling charge
$6.14
Amount Paid
$236.12
- 521: data processing, Site none, Mon 07-Jan-2008 14:22:29 MST, update splus code for new span gas cylinder...
* on Sun Jan 6 20:54:04 MST 2008
updated the splus code for the new span gas cylinder...ie:
if(t1 >= utime("07 jun 22 140000") & t1 < utime("07 dec 13 150000")) {
Cspan <- 402.0 # cal cylinder is CC240435, (Airgas Value=407.8 ppm)
# Trailer Cal=(401.72 + 402.56 + 401.74)./3=402.0067 ppm
}
if(t1 >= utime("07 dec 13 150000")) {
Cspan <- 334.86 # cal cylinder is Scott-Marrin CC66823, (Britt Value= 334.86)
#
}
to the files:
-rwxrwxr-x 1 sburns 18358 Jan 6 20:56 cal.co2.q*
-rwxrwxr-x 1 sburns 14575 Jan 6 20:57 cal.prof.q*
then did:
make .fun.cal.prof
make .fun.cal.co2
- 502: equipment purchases, Site none, Fri 09-Nov-2007 16:26:44 MST, new hard disk for urquell
* on 10/27 purchased a new (73 Gb) hard disk for urquell from
newegg.com. disk details:
NOTE EXT_WARRANTY:043069 FOR #22-148-280 1 $0.00 $0.00
22-148-280 HD 73.4G|ST 15K 16M 80P ST373455LC 1 $189.99 $189.99
This item is serviced by the SeaGate. Please call 800 -732-4283 for service. SNET-043069 2 Year Service Net Replacement Plan 1 $39.99 $39.99
note, that i paid for a 2 year net replacement plan!
* on 11/9/2007, disk installed by Jesse. Left in one of the old
(36Gb) disks (it was /data2/). This disk is now "/backup". We also
removed the stack of old disks and exabyte tape drive that were on top
of urquell. These disks can now be considered a "deep" backup.
* also removed the cpu fan from "old" urquell and put it in
urquell since that fan was noisy...and didn't seem to spin
too smoothly. fan details:
114140
0510E-12
12V 0.1A
540-2761-01
7GBB
Made in Japan
Shicoh
- 497: site visit, Site none, Thu 25-Oct-2007 13:41:03 MDT, site visit on Wednesday, October 24, 2007 (JB, MP, JH)
Wednesday, October 24th, 2007 Visit:
---------------------------------
At the site: JB, JH, MP
Details:
--------
Date: Wed, 24 Oct 2007 17:20:25 MDT
To: Sean.Burns@Colorado.EDU
From: Jeffrey Mark Beauregard
Subject: critical site updates from 10/24
Hi Sean.
1. I downloaded from the soil and tc loggers, and these data files are
in my h ome directory on russter2.
2. The N2 cylinder at the tower still has 400 psi of pressure, and the
span cylinder at the tower still has 700 psi of pressure.
3. I set up the cr23x but wasn't able to actually start it up because
I didn't have the green power plug with me...this was still on campus
from when I brought it down the other week...but I have located it
here and will bring it up to the site on my n ext visit.
4. Jia was up on the top of the north canopy tower today and called me
over to "chec k something out"...Noah's data logger box was wide
open. It looked like it had been left open ever since it was last
visited. The whole thing was in bad shape...everyth ing was sitting in
a few inches of water and ice. I didn't know what to do about it,
because it seemed that tipping over the box to empty the water would
have been a ba d idea...plus the logger seemed to be sitting a bit
above the water. Not sure how th is happened. I am guessing that at
some point everything in the box was covered in s now, so there might
be water damage to stuff that is now dry. Our "cuff" SC32A that you
put in there was totally submerged in water, so I took this out, dried
it off an d brought it back to campus this afternoon. My plan is to
test it with one of the av ailable 21x loggers at some point to see if
it still works.
5. There isn't that much snow on the forest floor, and today was
pretty warm up ther e.
If you do decide to go up tomorrow instead of Friday and can possibly
call me let me know, that would be ideal because I might not be able
to check my e-mail at home to night...Otherwise I will plan on Friday.
Jeff
-----------------------------
Date: Thu, 25 Oct 2007 10:49:49 MDT
To: Sean Burns
From: Jeffrey Mark Beauregard
Subject: Re: critical site updates from 10/24
Hi Sean.
Right-o...this wasn't Noah's box then, sorry for the confusion. It was
the MRS logger box. Anyway, I assume we will meet at 8:30 tomorrow
morning in Ramaley?
Jeff
---- Original message ----
>Date: Wed, 24 Oct 2007 17:28:54 -0600
>From: Sean Burns
>Subject: Re: critical site updates from 10/24
>To: Jeffrey Mark Beauregard
>Cc: sean.burns@Colorado.EDU
>
>
>Hi Jeff,
>
>sounds good.
>
>are you sure that was Noahs logger?? was it on the first level or the
>2nd level? i ask since i checked in noahs box (on the first level) a
>few weeks ago and it was empty....and i left our sc32a in the mrs
>logger box (on the 2nd level). so i'm a bit confused by this...it
>sounds like noah might have been there and re-installed everything?
>
>yes, let's plan for friday...
>
>thanks,
>
- 495: site visit, Site none, Wed 17-Oct-2007 11:23:25 MDT, site visit on Tuesday, October 16, 2007 (JB, SpB, NT, Charlie, LL)
Tuesday, October 16th, 2007 Visit:
---------------------------------
At the site: SpB, JB, NT, C, LL
Purpose of visit: setup some thermocouples at the N Can tower (never
happened).
Weather: Colder than it has been. About 5" of new snow on the ground
from the storm on Sunday. The road was ok.
--------- Misc Notes:
* drove up in the CU grey jeep.
* Nicole/Charlie were putting up snow fencing down by her plots.
---------
* Jeff and I helped Lynette collect soil samples along the tram
line in the morning. We also pulled out all of her soil moisture
and temperature probes.
* at ~13:45 MST, turned off the slow ozone sensor (TECO).
* at 13:40 MST, disconnected the KZ PAR-Lite sensor.
* there was a cylinder of zero air (CC153241) that was outside the
fence at the tower...this cylinder had around 1300 psi of pressure.
moved it inside the fence and put it on the pallete.
* brought down the empty cylinder of zero air that was at HYDRA (CC?).
* brought up a full cylinder of N2 (it's on the floor of the trailer).
* checked the snowprobes and tape marking the hts.
tree = ok.
mid = 3cm too high, ie, a 40cm reading is ACTUALLY 37cm.
far = ok.
* left a spool of TC wire out by the N Canopy tower.
we visited the old hydra and TRAM site at Como Creek to remove LL's soil gear,
and also visited cuff
- 494: site visit, Site none, Wed 17-Oct-2007 11:21:47 MDT, site visit on Friday, October 12, 2007 (JB, SpB, RM, SO+)
Friday, October 12th, 2007 Visit:
---------------------------------
At the site: SpB, JB, RaM, SO + NCAR Crew
Purpose of visit: help move tram.
Weather: Awesome Fall weather continues.
--------- Misc Notes:
* drove up in the CU grey jeep.
---------
* spent part of the morning moving Tram stuff from Como creek up to
near CUFF tower.
* at 12:45 MST, shutdown HYDRA for the year. Packed it up and moved
it down to NCAR for the winter. Note, on 10/10 all the inlets at
different heights on the tram towers were moved together for a mini
comparison. There are data from the night of 10/11 and the morning of
10/12 to compare these.
* the final pressures of gas cylinders at HYDRA:
Cylinder Pressures:
===================
JA02103 JJ21180 JJ14766 JJ16850 JJ23865 0 Air N2
Date JD 349/C2 375/LC 384/C4 417/LC 476/LC Ref LC
---- --- ------- ------- ------- ------- ------- ------ ----
8/6 218 1800 1790 1720 890 1790 1500 1750
8/9 221 1800 1790 1720 890 1400 1500 NaN
8/16 228 1700 1790 1690 850 975 1450 NaN
8/23 235 1600 1790 1550 850 775 1300 NaN
8/27 239 ? 1790 1500 850 700 1200 NaN
9/6 249 ? 1775 1400 750 575 900 NaN
10/12 285 1350 1775 810 100 575 100 NaN
* the steps for re-starting the isff.colorado.edu data system (all
done as root):
/etc/rc3.d/S99isff start
adamserver
nc_server (don't think this matters)
rtrun -r 5 serial_ingest -z (probably not needed?)
kill -HUP (ingest process 1)
something like: aster 12415 0.0 0.5 4832 1528 pts/4 S 23:28 0:00 -tcsh -c /home/aster/bin/Linuxi686/ingest -z; /home/aster/projec
kill -HUP (ingest process 2)
ingest (start ingest again).
then you should get something like:
CheckAster
Thu Oct 11 23:47:21 MDT 2007
------------- Environment -------------
PROJECT = NIWOT07, OPS=ops3
------------- Server tasks -------------
host user pid start exectime process
aster aster 12563 23:30 ? 00:00:00 adamserver
aster root 12762 23:31 ? 00:00:00 nc_server
------------- Ingest tasks -------------
host user pid start exectime process
aster root 12995 23:33 ? 00:00:00 ingest
------------- Archive tasks -------------
host user pid start exectime process
aster root 12468 23:28 ? 00:00:00 archive aster .
-------------- Covar calcs --------------
host user pid start exectime process
-------------- X processes --------------
host user pid start exectime process
-------------- Ingest Statistics ----------
station port status up since sample/sec serialErrs
aster 59958 open Oct 11 23:28 1.46 0
-------------- Living adams --------------
aster
Filesystem 1K-blocks Used Available Use% Mounted on
/dev/hda3 14807880 10162008 3893652 73% /
/dev/hda3 14807880 10162008 3893652 73% /
-----------------------------------------
* tried to connect with the NCAR TC 23x data logger. Could not make
any kind of connection...tried to use the CSI Dev Config Utility...but
the following error would occur:
Device Disconnected
"Clock check with the data logger failed"
11:04:10.35 Fault
"Classic :: CmdClockSet"
when we tried to do *B at the keypad we would get an error, "Mode 11".
The other * inputs seemed to work ok (for example, *5 showed the clock
was working ok). we tried doing, "*AAAAA98765" to reset the logger
memory. After waiting about 10 minutes the screen went "black"...ie,
all the small cubes on the panel showed up as dark areas. And then we
couldn't do anything else with the logger.
* when we couldn't get anything to work with the cr23x we disconnected
all the thermocouples and removed it from the tower. The wiring is:
purple wire = High
red wire = Low
black = signal ground.
- 493: site visit, Site none, Wed 17-Oct-2007 11:20:33 MDT, site visit on Thursday, October 11, 2007 (JB, SpB, NT, AP, AT, SO+)
Thursday, October 11th, 2007 Visit:
-----------------------------------
At the site: SpB, JB, NT, A, SO + NCAR Crew
Purpose of visit: help move tram.
Weather: Awesome Fall weather.
--------- Misc Notes:
* drove up in the CU grey jeep.
---------
* spent most of the day moving Tram stuff from Como creek up to
near CUFF tower.
* tried to re-start the isff.colorado.edu data system, but it wasn't
working. tried again later that night (the network was ok) and got it
going (see notes on 10/12/2007 about this).
* swapped four flasks at the west robot.
* hydra/TRAM site
- 492: site visit, Site none, Wed 17-Oct-2007 11:19:10 MDT, site trip on Wednesday, October 10, 2007 (JB, SpB, MW, SO+)
* hydra/TRAM site
- 489: site visit, Site none, Wed 03-Oct-2007 16:22:22 MDT, site visit on Wednesday, October 3, 2007 (JB, MW, MP, AW, LL, JM)
***photo diode wand tree; removed the wands
- 484: site visit, Site none, Wed 19-Sep-2007 17:57:08 MDT, site visit on Wednesday, September 19, 2007 (JB, SL)
* Nicole's soil plots 6-15
- 476: site visit, Site none, Tue 21-Aug-2007 11:31:57 MDT, site visit on Monday, August 20, 2007 (JB, SL, MP, RKM, LL, Steve Semmer, John Militzer)
site=Maggie's photodiode "wand" sensor tower
* downloaded logger data:
-rwxr-xr-x 1 sburns aster 547442 Aug 20 13:30 soil8_20.dat*
-rwxr-xr-x 1 sburns aster 1166991 Aug 20 13:41 soil8_20b.dat*
-rwxr-xr-x 1 sburns aster 1347885 Aug 20 14:03 soil8_20c.dat*
-rwxr-xr-x 1 sburns aster 479027 Aug 20 14:07 soil8_20d.dat*
- 470: site visit, Site none, Tue 31-Jul-2007 15:10:44 MDT, site visit on Monday, July 30, 2007 (JB, DK, SL, NT)
diurnal soil respiration measurements at Nicole's site by the old east robot
* dry ice into hydra @ 9:45 MST
* hydra span @ 1750 psi @ 9:40 MST
* hydra N2 @ 1850 psi @ 9:40 MST
- 462: site visit, Site none, Thu 12-Jul-2007 09:49:19 MDT, site visit on Thursday, July 12, 2007 (JB, MP, JH, DK, SLS, Ramesh, LL, SL, NT)
robot flask swap
guying MP's new tower
- 461: site visit, Site none, Thu 12-Jul-2007 09:47:10 MDT, site visit on Wednesday, July 11, 2007 (JB, RKM, EB, SL, SpB)
Wednesday, July 11th, 2007 Visit:
---------------------------------
At the site: SpB, JB, RKM, EB, SL
Purpose of visit: create tower for photodiode plot (move east
robot tower).
Weather: very fine.
--------- Misc Notes:
* drove up the Jeep rental.
---------
* dismantled the east robot and combined this with the tower sections
from the old ncar "central" tower (NIWOT02).
* the fiber-optic converter in the trailer is a:
Optical Data Ssytems (ODS) model 471
10BaseT/10Base-FL Converter
* we're still trying to get the edgeport issue fixed..ie:
To: Jeffrey Mark Beauregard
cc: sean.burns@Colorado.EDU
Subject: Re: edgeport
Date: Tue, 10 Jul 2007 13:45:47 -0600
From: "Sean Burns"
hi jeff,
i recieved the following email from you about this:
From: Jeffrey Mark Beauregard
Subject: one other thing
To: Sean.Burns@Colorado.EDU
Date: Fri, 15 Jun 2007 11:45:19 -0600 (MDT)
I forgot to mention this a second ago...Our edgeports were repaired,
not replaced. They also did a nice job of cleaning them up on the
outside. They almost look new...I have the repair reports (1 for each
edgeport) and a shipping order. I will put these in the receipts
binder.
based on this it sounds like they might be in one of the receipts
binders? it would be good to have a record of which edgeport (ie, the
serial number) is still broken. I know it's the newer one, but not
sure the serial number...though i might have that info somewhere.
SpB.
> Sean,
>
> When we received the two edgeports after their service by Digi,
there was a RMA Customer Repair Report with each one...I vaguely
remember showing you these...I was told by Digi that these could be
helpful for dealing with the new edgeport problem. Do you happen to
know where these are? I cannot seem to find them amongst my notes
and documents...
>
>
> Thanks,
>
> Jeff
- 432: equipment purchases, Site none, Wed 23-May-2007 14:29:01 MDT, sent 2 edgeports back to DIGI Int'l Inc. for warranty repairs
both edgeports fried, removed from quacker box on 5-21-07, both belong to CUFF
Contact info for DIGI Int'l Inc. general support 512.306.0930
Mike Swift: mike.swift@digi.com 512.306.1109
Dear Jeffrey,
I have attached a copy of your RMA documentation. Please take a few
minutes to read it through, sign, and fax back the signature page (2nd
page at bottom) to (512)306-0694. If you have any questions in regards
to this matter please feel free to contact me at the numbers listed
below.
Regards,
Alicia Burchett
Sales Admin
Digi International
512.306.0712 ph 512.306.0694 fax
www.digi.com
SNs: V21696605 Edgeport/8
V33151891 Edgeport/8
- 431: equipment purchases, Site none, Wed 23-May-2007 13:49:28 MDT, purchase gast rebuild kit (vanes, etc)...
May 23, 2007.
Ordered 4 repair kits for the GAST 1531-107B-G557X pumps (run the EC system).
This is gast service kit K219.
contact info:
Steve Knox
Fiero Power
303.431.3600
information about life of vanes = 10000 hours. (416 days).
life of bearing is ~ 27000 hours (for low pressure)....
so, probably a good idea to change the vanes about once a year.
if the bearing goes bad then it's better to replace the pump.
- 418: data processing, Site none, Fri 26-Jan-2007 14:03:45 MST, updated splus code on Jan 20th., 2007
On Jan 20, 2007:
updated splus code for the cal gas cylinder installed on Jan 9th.
code changed is:
-rwxrwxr-x 1 sburns 17879 Jan 20 16:25 cal.co2.q*
-rwxrwxr-x 1 sburns 14099 Jan 20 16:26 cal.prof.q*
if(t1 >= utime("06 aug 13 110000") & t1 < utime("07 jan 9 140000")) {
Cspan <- 404.6 # cal cylinder is CC187116, (Airgas Value=400.0 ppm)
# Trailer Cal=(404.26+404.12+404.89+405.24)./4=404.6
}
if(t1 >= utime("07 jan 9 140000")) {
Cspan <- 397.6 # cal cylinder is CC57787, (Airgas Value=396.0 ppm)
# Trailer Cal=(397.98 + 397.04 + 397.33 + 397.87)./4=397.6
}
261c261
< if(t1 >= utime("06 aug 13 110000") & t1 < utime("07 jan 9 140000")) {
---
> if(t1 >= utime("06 aug 13 110000")) {
266,270d265
< if(t1 >= utime("07 jan 9 140000")) {
< Cspan <- 397.6 # cal cylinder is CC57787, (Airgas Value=396.0 ppm)
< # Trailer Cal=(397.98 + 397.04 + 397.33 + 397.87)./4=397.6
< }
<
make .fun.cal.prof
make: `.fun.cal.prof' is up to date.
make .fun.cal.co2
make: `.fun.cal.co2' is up to date.
- 342: data processing, Site none, Wed 11-Jan-2006 16:30:07 MST, updated splus files on urquell
on 11/11/05, updated the files:
-rwxrwxr-x 1 sburns 15961 Nov 12 00:24 cal.co2.q*
-rwxrwxr-x 1 sburns 13311 Nov 12 00:25 cal.prof.q*
with the latest cal gas info...ie:
if(t1 >= utime("05 jan 20 113000") & t1 < utime("05 jun 30 100000")) {
Cspan <- 405.5 # cal cylinder is CC187532, (Airgas Value=401.0 ppm)
# 11:30 MST, Jan 20th 2005 -> 10:00 MST, June 30th 2005
# 11/1/05, Trailer Cal:(406.27+404.73+405.34+405.64)./4= 405.4950 +/- 0.64
}
if(t1 >= utime("05 jun 30 100000") & t1 < utime("05 sep 20 100000")) {
Cspan <- 417.953 # cal cylinder is CA02337, Scott-Marrin, calibrated by Britt
# 10:00 MST, June 30th 2005 -> 9:50 MST, Sep 20th 2005
# 1030 psi 5 CA02337 417.953 0.011 3 (Scott-Marrin)
}
if(t1 >= utime("05 sep 20 100000") & t1 < utime("05 nov 1 153000")) {
Cspan <- 349.265 # cal cylinder is CC114714, Scott-Marrin, calibrated by Britt
# 9:50 MST, Sept 20th 2005 -> 15:30 MST, Nov 1st 2005
# 920 psi 7 CC114714 349.265 0.017 3 (Scott-Marrin)
}
if(t1 >= utime("05 nov 1 153000")) {
Cspan <- 407.3 # cal cylinder is CC156367, (Airgas Value=406.4 ppm)
# Trailer Cal=(407.94+407.59+407.29+406.64)./4=407.365 +/- 0.5
}
then did:
make .fun.cal.co2
make .fun.cal.prof
- 326: equipment purchases, Site none, Mon 10-Oct-2005 11:02:52 MDT, ati sonic upgrade
To: "gary"
cc: sean.burns@Colorado.EDU, kirk.ranno@Colorado.EDU
Subject: Re: sonic anemometer #980201
Date: Thu, 21 Jul 2005 08:23:20 -0600
From: "Sean Burns"
Hi Gary,
I emailed with Russ. Please go ahead and replace all the transducers
and also the electronics board (for $1250). i'll be out of town until
Aug 7th but just let us know when it is ready to be picked up (email
works best)...do you need any credit card information before you get
started?
thanks,
SpB.
> Sean,Kirk,
>
> This sonic anemometer was built in 1998. It has been in for repair four
> times, the last time was just a check out.
> All six of the transducers have been replaced, but not at the same time. It
> is necessary to remove all transducers, even if only one is being replaced.
> A repurcussion of this is that the transducer wires keep getting shorter
> each time any of the transducers are replaced. The transducer wires are now
> unworkable.
>
> The connections to the transducer wire are also quite worn, from the
> multiple removal/installation. The sonic electronics board has been
> re-designed since this instrument was built and does a better job of signal
> conditioning. The higher elevation of this application is more challenging
> for the transducers and the signal conditioning. The sound pulses are more
> attenuated in the less dense atmosphere.
>
> For all the above reasons, my reccomendation for this sonic is that all six
> transducers and the electronics board be replaced. Because some of the
> damage is due to the number of repairs, we feel somewhat responsible, and
> will do this repair at cost. Our best price for this job is $1250. You would
> have a nearly new, fully warranted sonic anemometer.
>
> We have transducers in house, but I don't have an electronics board. I
> estimate about two weeks to get this job done.
>
> Let me know what you would like to do.
>
> Gary Zimmerman
> Applied Technologies Inc
> (303) 684-8722
> gary@apptech.com
>
>
- 325: data processing, Site none, Mon 10-Oct-2005 11:00:00 MDT, updated splus files (8/12/05)
on 8/12/05, updated the files:
-rwxrwxr-x 1 sburns 15064 Aug 12 12:24 cal.co2.q*
-rwxrwxr-x 1 sburns 12414 Aug 12 12:25 cal.prof.q*
with the latest cal gas info...ie:
if(t1 >= utime("05 jan 20 113000") & t1 < utime("05 jun 30 100000")) {
Cspan <- 401.0 # cal cylinder is CC187532, 401.0 ppm
# 11:30 MST, Jan 20th 2005 ->
}
if(t1 >= utime("05 jun 30 100000")) {
Cspan <- 417.953 # cal cylinder is CA02337, Scott-Marrin, calibrated by Britt
#
}
still need to run cals on CC187532 in the trailer!!
then did:
make .fun.cal.co2
make .fun.cal.prof
- 324: equipment purchases, Site none, Mon 10-Oct-2005 10:58:51 MDT, soil sensors bought in May, 2005
Instrument Purchases: (campbell order no: 148075)
(1) 107-L Temperature Probe s/n $67.20
(w/25' cable22 awg1) $6.50
(2) CS-616-L water content reflectometer $144.00/each
job # 153024 (all the same)
(also 25' cable)
(3) 253-L Watermark soil matric potential block $46.08
job # 153025
(3) 257-L Watermark soil matric potential block $88.32
job # 153026
- 289: data processing, Site none, Fri 24-Jun-2005 16:07:38 MDT, Data Processing -- updated splus code for new par sensor coefficients.
% updated splus software to use the new cal coefficients for the PAR sensors:
% Wed May 11 08:14:27 MDT 2005
fgrep 0.29512 *q
light.calculate.q:# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
light.calculate.q:par.up <- par.up*0.29512*1000
logger.input.q:cnr[,10] <- cnr[,10]*0.29512*1000
met.data.q:# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
met.data.q:PAR.up <- PAR.up*0.29512*1000
met.data2.q:# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
met.data2.q:PAR.up <- PAR.up*0.29512*1000
monthly.met.q:# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
monthly.met.q:PAR.up <- PAR.up*0.29512*1000
montly.met.q:# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
montly.met.q:PAR.up <- PAR.up*0.29512*1000
radiation.q:# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
radiation.q:PAR.up <- PAR.up*0.29512*1000
shadowband.q:PAR.up <- PAR.up*0.29512*1000
update the following programs:
met.data.q
########################################################################
###### PAR sensors
if(t1 > utime("99 jun 23 140000")) {
# Convert PAR up and down to real units :
# PAR.up : Serial #Q23139 Cal. constant = 5.61
# PAR.dn : Serial #Q22793 Cal. constant = 5.65
# Units are microA/1000*micromol s-1 m-2
# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
# PAR.dn : Voltage calibration : Signal (mV)*0.29303*1000
# Final units : micromoles/m-2 s-1
PAR.up <- PAR.up*0.29512*1000
PAR.dn <- PAR.dn*0.29303*1000
PAR.net <- PAR.up - PAR.dn
}
if(t1 > utime("01 jul 11 000000")) {
par.dif <- par.dif*241.1
}
was changed to:
if(t1 >= utime("99 jun 23 140000") & t1 < utime("05 feb 17 150000")) {
# if(t1 > utime("99 jun 23 140000")) {
# Convert PAR up and down to real units :
# PAR.up : Serial #Q23139 Cal. constant = 5.61
# PAR.dn : Serial #Q22793 Cal. constant = 5.65
# Units are microA/1000*micromol s-1 m-2
# PAR.up : Voltage calibration : Signal(mV)*0.29512*1000
# PAR.dn : Voltage calibration : Signal (mV)*0.29303*1000
# Final units : micromoles/m-2 s-1
PAR.up <- PAR.up*0.29512*1000
PAR.dn <- PAR.dn*0.29303*1000
PAR.net <- PAR.up - PAR.dn
}
if(t1 > utime("05 feb 17 150000")) {
# New par sensors installed on Feb 17th 2005 at 3pm.
# Convert PAR up and down to real units :
# PAR.up : Serial #Q34620 Cal. constant = 5.75 umol/(sec m2)
# PAR.dn : Serial #Q34619 Cal. constant = 5.62 umol/(s m2)
PAR.up <- PAR.up*0.28793*1000
PAR.dn <- PAR.dn*0.29460*1000
PAR.net <- PAR.up - PAR.dn
}
then did:
make .fun.met.data
Splus.compile -D /usr/local/aster/isff/.Data/NIWOT met.data.q && touch .fun.met.data
S-PLUS : Copyright (c) 1988, 1996 MathSoft, Inc.
S : Copyright AT&T.
Version 3.4 Release 1 for Sun SPARC, SunOS 5.3 : 1996
**************** Messages for Local Splus Users **********************
There's help! From the Splus prompt, enter:
help(local) for info on local developments (updated Feb 23, 1998)
help(news) for Splus news (updated Oct 1, 1996)
help(sheba) a little help for the SHEBA project (Feb 24, 1998)
help.start() X help window
q() to exit Splus
To display current users, from the shell prompt, enter:
Splus LICENSE users
**********************************************************************
Attached /usr/local/aster/isff/.Data/NIWOT
Working data will be in /home/staff/sburns/.Data
NULL
Warning: Audit file is 568091 characters long.
Run TRUNC_AUDIT to truncate it. See help file for complete
instructions.
- 269: equipment purchases, Site none, Mon 21-Mar-2005 15:18:53 MST, LI-COR 190SA Sensors
Tues, Feb 8th:
--------------
ordered 2 li-190SA sensors from licor:
Two LI-190SA sensors $340 /each
Two 2290 Millivolt Adapters $27 /each
One 2003S Mounting and Leveling Fixture $44 /each
phone: 1.800.447.3576
talked to: Tanvir (Baneeta).
- 188: data processing, Site none, Tue 11-May-2004 11:59:24 MDT, Logger Data Processing Feb/March/April 2004
% Logger data processing Notes
...all fine on the main tower, N Canopy tower had power problems...the
battery was slowly losing power (see this by plotting the battery voltage
from the MRS logger).
around March 20th (jd 80) it really started having problems and we lost
data from the TC and soil cr23x data loggers. apparently the cr10x
needs less power and the MRS snowprobe data were more-or-less ok.
it looks like soil5_3b.dat holds all the data from jd 74-118:
ie, soil5_3b.dat: 74 to 118.
there is a large gap in the middle of this file..this is when the
power was not working well at the N canopy tower...the gap is:
137,82,1820,-6999,-.195,.009,.018,.045,
137,82,1825,-6999,-.195,.005,.018,.046,
137,325,1515,-6999,-19.14,-20.7,-.446, **** remove
137,105,1500,-6999,-.602,-.721,-.601,-.31, **** remove
137,105,1505,-6999,-.601,-.726,-.592,-.312, **** remove
137,105,1510,-6999,-.597,-.728,-.595, **** remove
137,105,1515,-6999,-.6,-.726,-.594,-.32, **** remove
137,105,1520,-6999,-.601,-.726,-.6,-.321, **** remove
137,110,1250,-6999,-.601,-.727,-.595,-.321
137,110,1255,-6999,-.604,-.726,-.599,-.32,
137,110,1300,-6999,-.603,-.729,-.6,-.321,
this creates nearly a 1 month gap in the data!!
note that soil3_17b.dat stops at day77...ie,
tail soil3_17b.dat
137,77,1530,-6999,-.424,-.629,
137,77,1535,-6999,-.428,-.627,
and soil5_3b.dat starts at day 74...so there is some overlap
here...remove the first 3 days of data from soil5_3b.dat and then
everything is clean.
now, i combined soil5_3b.dat and soil5_3c.dat into soil5_3.dat ... use soil5_3.dat for March, April, and May!!
here are the files:
-rw-rw-r-- 1 sburns 127109 May 7 09:56 CNR_2004_02.csv
-rw-rw-r-- 1 sburns 136465 May 7 10:03 CNR_2004_03.csv
-rw-rw-r-- 1 sburns 134195 May 10 09:31 CNR_2004_04.csv
-rw-rw-r-- 1 sburns 1326704 May 7 12:48 CO2_2004_02.csv
-rw-rw-r-- 1 sburns 1391763 May 7 15:33 CO2_2004_03.csv
-rw-rw-r-- 1 sburns 1391828 May 10 11:18 CO2_2004_04.csv
-rw-rw-r-- 1 sburns 247909 May 7 12:52 MET_2004_02.csv
-rw-rw-r-- 1 sburns 267213 May 7 15:40 MET_2004_03.csv
-rw-rw-r-- 1 sburns 257912 May 10 11:25 MET_2004_04.csv
-rw-rw-r-- 1 sburns 613282 May 7 12:28 MRS_2004_02.csv
-rw-rw-r-- 1 sburns 644612 May 7 13:46 MRS_2004_03.csv
-rw-rw-r-- 1 sburns 578418 May 11 10:50 MRS_2004_04.csv
-rw-rw-r-- 1 sburns 74791 May 7 12:39 PRF_2004_02.csv
-rw-rw-r-- 1 sburns 78429 May 7 13:50 PRF_2004_03.csv
-rw-rw-r-- 1 sburns 86344 May 10 09:36 PRF_2004_04.csv
-rw-rw-r-- 1 sburns 555025 May 7 11:58 SOIL_2004_02.csv
-rw-rw-r-- 1 sburns 522376 May 10 08:56 SOIL_2004_03.csv
-rw-rw-r-- 1 sburns 413033 May 10 09:11 SOIL_2004_04.csv
-rw-rw-r-- 1 sburns 297287 May 7 11:26 TCs_2004_02.csv
-rw-rw-r-- 1 sburns 267283 May 11 09:48 TCs_2004_03.csv
-rw-rw-r-- 1 sburns 226988 May 11 11:27 TCs_2004_04.csv
-rw-rw-r-- 1 sburns 157549 May 7 12:58 TCs_NCAR_2004_02.csv
-rw-rw-r-- 1 sburns 159561 May 7 15:46 TCs_NCAR_2004_03.csv
-rw-rw-r-- 1 sburns 157712 May 10 11:31 TCs_NCAR_2004_04.csv
-rw-rw-r-- 1 sburns 163739 May 7 13:05 UC_2004_02.csv
-rw-rw-r-- 1 sburns 161680 May 7 15:52 UC_2004_03.csv
- 173: equipment purchases, Site none, Mon 15-Mar-2004 16:30:44 MST, recent purchases (REBS domes, matlab, + misc)
On 3/13/2004:
McGuckins:
Flagging (green roll) : $1.79
Flagging (orange roll) : $1.79
8-piece screwdriver set: $9.99
Tool Roll-up bag: $13.49
set of mini-screwdrivers: $6.99
small tape measure: $0.99
?: $3.99
--------
total ------------------> $39.03
On 3/8/2004:
4 pair of REBS polyethylene domes (for Q7.1 net radiometer):
cost is $18.40 / pair, total = $80.49
REBS, INC
Radiation & Energy Balance Systems, Inc
PO Box 40203
Bellevue, WA 98105-0203
ph: 206.624.7221
on 3/4/2004:
Matlab license yearly renewal: $99.96
- 153: data processing, Site none, Sun 04-Jan-2004 12:22:53 MST, New Span Gas at Tower
* Data processing notes:
---when the span gas is changed two files need to be modified in
/usr/local/aster/isff/src/sfun/NIWOT/....these are:
-rwxrwxr-x 1 sburns 13760 Nov 9 13:38 cal.co2.q*
-rwxrwxr-x 1 aturnip 10997 May 22 2003 cal.prof.q*
(didn't realize this earlier so only cal.co2.q was modified).
added:
if(t1 >= utime("03 nov 01 143000")) {
Cspan <- 345.4 # cal tank value in ppm from (Scott-Marin Cylinder)
# Nov 1, 2003 ->
}
to both files. Also, updated for the span tank changed on 12/4/2003, ie:
if(t1 >= utime("03 nov 01 143000") & t1 < utime("03 dec 04 133000")) {
Cspan <- 345.4 # cal tank value in ppm from (Scott-Marin Cylinder)
# Nov 1, 2003 -> Dec 4, 2003
}
if(t1 >= utime("03 dec 04 133000")) {
Cspan <- 402.1 # cal tank is CC66062, (402.59+400.98+402.8)./3=402.12
# Dec 4, 2003 ->
}
then do,
make .fun.cal.co2
make .fun.cal.prof
- 149: hydra, Site none, Fri 12-Dec-2003 14:20:24 MST, How to do a snow pit
Snow Pit Technique:
------------------
fill in "snow cover profile" form. (forms and pit kit are in
the CU trailer).
1. Dig Pit
2. Boot Penetration (measure depth of boot impression).
3. Measure snow pit depth
4. Do air temperature (compare probes)
5. Tare scale with the 1 liter snow wedge (~740 g)
6. Do layer temps at 5 cm increments (in middle of 10-cm layers)
7. Do density measurements in 10cm segments (ie, 0-10, 10-20, etc).
8. test for layers
9. look at snow grains from layers.
- 147: data processing, Site none, Fri 12-Dec-2003 14:10:21 MST, Nov/Dec logger files for uc logger.
For the UC logger there were many files (i think because "collect all"
was used for the last download)...the files are:
-rwxrwxr-x 1 sburns 729301 Dec 4 14:49 uc12_4.dat*
-rwxrwxr-x 1 sburns 273035 Dec 4 14:54 23xucb.dat*
-rwxrwxr-x 1 sburns 757890 Dec 4 15:00 uc12_b.dat*
-rwxrwxr-x 1 sburns 253144 Dec 4 15:10 123.dat*
-rwxrwxr-x 1 sburns 518316 Dec 4 15:14 uc12_pc.dat*
-rwxrwxr-x 1 sburns 289426 Dec 4 15:18 123b.dat*
-rwxrwxr-x 1 sburns 174 Dec 4 15:18 test.dat*
most of these data are not needed...the files which have the most
recent data are: "uc12_b.dat" and "uc12_pc.dat"
more uc12_b.dat
2,287,325,.704,.362,225.3,56.46,.555,.395,260.5,43.6,.635,.423,139.1,46.8,2690,520.1
2,287,330,.65,.188,223.1,68.29,.498,.266,262.7,55.26,.612,.288,133.7,58.91,2685,493.3
2,287,335,.853,.488,209.8,52.94,.903,.708,248.1,37.65,.757,.592,146.9,37.81,2682,479.4
2,287,340,.752,.463,231,50.24,.831,.673,258.6,35.34,.797,.624,143.4,37.69,2686,486.2
tail uc12_b.dat
2,317,2030,.819,.358,138.4,60.73,.544,.148,189.9,69.12,.59,.22,200.4,64.1,2609,1137
2,317,2035,.861,.373,116.3,60.98,.655,.179,106.6,69.02,.664,.166,276.5,70.2,2573,1109
2,317,2040,.878,.373,136,61.46,.601,.222,161.8,64.35,.644,.272,226.6,61.57,2575,1077
more uc12_pc.dat
,65.64,.658,.224,254.3,65.72,2575,1035
2,317,2120,1.024,.51,118.9,57.39,.822,.287,118.3,65.34,.742,.283,267.2,63.7,2576,1035
2,317,2125,.922,.485,138.6,55.78,.698,.294,157.9,61.65,.712,.365,232.2,56.59,2578,1039
2,317,2130,.976,.517,130.6,55.56,.882,.282,161.6,66.82,.757,.272,225.8,64.86,2578,1034
tail uc12_pc.dat
2,338,1455,.37,.154,277.5,61.91,.182,.124,303.5,45.89,.297,.123,103.3,61.99,2712,656.6
2,338,1500,.573,.441,238.6,38.91,.48,.399,266.2,33.25,.56,.444,142.6,36.85,2699,632.5
2,338,1505,.395,.283,234.3,43.03,.202,.162,254.3,36.23,.381,.308,145.8,35.46,2702,628.3
the uc12_b.dat file overlaps with uc11_4.dat...ie:
fgrep '2,308,1205' ../uc11_4.dat
2,308,1205,.741,.224,44.7,67.64,.627,.205,66.78,66.46,.63,.186,299.1,67.96,2666,632.8
fgrep '2,308,1205' *.dat
2,308,1205,.741,.224,44.7,67.64,.627,.205,66.78,66.46,.63,.186,299.1,67.96,2666,632.8
need to get rid of "uc11_19.dat". . .this file has some older data in it...ie:
more ../uc11_19.dat
2,232,1100,.881,.247,152.9,68.7,.776,.17,146.3,71.6,.704,.17,213.7,70.5,2494,1295
2,232,1105,.795,.41,72.9,56.36,.577,.283,56.04,57.77,.571,.216,342.2,63.85,2495,1277
tail ../uc11_19.dat
2,257,1025,.666,.223,247.7,66.04,.548,.214,277.9,63.19,.643,.281,126.4,60.79,3639,5009
2,257,1030,.754,.291,181.5,63.46,.455,.041,169.4,77.3,.57,.15,181.6,69.54,4504,5009
here's fix#1:
cp uc12_b.dat uc11_19.dat
tail ../uc11_4.dat
2,308,1205,.741,.224,44.7,67.64,.627,.205,66.78,66.46,.63,.186,299.1,67.96,2666,632.8
2,308,1210,.885,.313,.424,65.13,.853,.201,4.973,70.8,.77,.083,20.91,76.5,2666,682.8
2,308,1215,.893,.379,234.6,61.47,.846,.398,261.4,58.97,.794,.43,140.6,54.86,2671,641.1
2,308,1220,.668,.245,306.9,64.47,.48,.201,319.3,61.76,.562,.217,92.3,63.48,2675,585
2,308,1225,1.067,.768,13.67,42.92,1.241,.836,11,46.23,.948,.597,1.222,49.29,2669,653.9
2,308,1230,.869,.289,241.7,66.18,1.059,.536,241.5,56.95,.869,.419,149.1,58.28,2678,620.8
2,308,1235,.742,.188,320.5,70,.826,.354,18.52,61.21,.737,.236,47.89,66.75,2677,628.5
2,308,1240,.704,.221,154.3,67.1,.714,.268,171.7,64.04,.711,.311,213.1,60.8,2679,583.5
2,308,1245,.939,.22,208.6,70.9,1.11,.589,230.8,55.49,.91,.448,167.1,57.73,2681,615.2
2,308,1250,.877,.13,31.64,74.8,.792,.087,239.2,76.4,.778,.158,178,72.3,2679,602
--now edited the "uc11_19.dat" to start where ../uc11_4.dat ends.
mv uc12_4.dat uc12_4_wrong.dat
mv uc12_pc.dat uc12_4.dat
Now I have 2 files from the uc logger which are:
-rwxrwxr-x 1 sburns 229317 Dec 7 15:23 uc11_19.dat*
-rwxrwxr-x 1 sburns 518278 Dec 7 15:24 uc12_4.dat*
no other files are needed!
- 132: data processing, Site none, Tue 28-Oct-2003 13:13:36 MST, updated licor6262 info.
Oct 28, 2003:
Updated the files:
-rwxrwxr-x 1 sburns 13522 Oct 28 13:13 cal.co2.q*
-rwxrwxr-x 1 sburns 6860 Oct 28 13:11 co2.h2o.q*
with the recalibrated licor6262 info:
if(t1 >= utime("03 oct 21 130000")) {
## Recalibrated in September, 2003 (The cell was replaced)
To <- 38.79+273.15 # K
K <- 17901
A <- 1.35603E-01
B <- 1.27271E-05
C <- 4.632E-09
D <- -4.23231E-13
E <- 2.7365E-17
R <- 0.0
p.slope <- 0.0152 # kPa/mV
p.offset <- 59.123 # kP
### H2O coefficients
ToH <- 39.43 + 273.15
KH <- 16088
AH <- 6.14523E-3
BH <- 2.58132E-6
CH <- 2.03002E-11
}
- 122: equipment purchases, Site none, Mon 06-Oct-2003 18:02:36 MDT, Edgeport /8 - USB to 8-Port EIA232 Serial DB9
bought another edgeport:
Hello from PROVANTAGE.COM,
We have processed a shipment on order number 1738063.
Quantity 1 - (DBRD310) Edgeport/8 - USB to 8-Port EIA232 Serial DB9 @
$325.98 each.
Subtotal: $325.98
Shipping: $7.45
------------------------------
Total: $333.43 (US dollars)
- 116: equipment purchases, Site none, Thu 25-Sep-2003 12:27:13 MDT, Recent Purchases (computer stuff, misc...)
% Here's a list of some things I've bought recently:
9/23/03: Radio Shack
--------------------
two 12V, 2.3A-hour Camcorder Batteries (23-187A), $45/each
9/23/03: Buffalo Chip
---------------------
Targus Model PA055 Ultra-Mini USB 4-port Hub, $18.50
2-pack of 9V Batteries (for GPS), $11.20
9/15/03: McGuckins
-------------------
2 Deep-cycle Marine Batteries (about $70/each)
1 small notebook (about 70 cents)
8/28/03: CompUSA
------------------
Belkin 10' CAT5e Crossover Cable (A3x126-10cM), $15
Belkin 200' (?) Fast cat5e Cable (to go under the
road..it's in the trailer).............$80.
- 103: equipment purchases, Site none, Tue 02-Sep-2003 08:13:12 MDT, Chemicals
% Chemicals Order (Sept 2, 2003):
From Aldrich: 1.800.558.9160
26,643-4: 500g of Magnesium Perchlorate...~$100
22,228-3: 500g of Soda Lime...............~$40
2-day shipping ~ $20.
ref# 8753163.
- 102: equipment purchases, Site none, Wed 27-Aug-2003 12:38:09 MDT, Cylinders in lab to be picked up
Called Bob at distribution services (2-6369) to pick up
the empty N2 Cylinders in the lab...the numbers on these
are:
1. CC125 562 (Hanks cylinder)
2. CC140 772
3. CC177 35
Bob is going to send over some paperwork and then we
will work out a day to have them picked up.
- 89: equipment purchases, Site none, Thu 24-Jul-2003 17:18:43 MDT, purchase of APC Serial cable (from UPS to quacker)
July 2003.
purchased the following cable:
APC 940-0023A Eq.
Stonewall part no: SC-7409
phone: 1-800-525-3303
price: around $30.
- 70: bowling, Site none, Mon 07-Jul-2003 16:45:45 MDT, NOte: Laser Data giving ZERO.
July 7, 2003.
I was about to leave and was checking the laser data one last time. Both
signals are at zero. This appeared to happen at about 22:39 UTC (16:39 MDT).
Will check these again tomorrow morning (might need to go up to the site
to figure out what happened).
- 69: bowling, Site none, Mon 07-Jul-2003 15:24:08 MDT, Note: Laser Data clipped
July 7th, 2003.
Started cockpit this morning and laser data appeared to
be working fine. Since cockpit leaves a data trace as it
runs, I can see that, at some point during the day, the laser
data were clipping. It's difficult to say how long this happened
for (it looks like a short time). It was sometime between about
10am and 2pm MDT. Everything looks fine now so there is nothing
to do about this.
SpB.
- 57: equipment purchases, Site none, Thu 19-Jun-2003 11:23:50 MDT, Liquid Nitrogen Purchase
Liquid Nitrogen Purchase:
-------------------------
CU Contact: Ernie Valdez, 303.492-6322
(I talked to Jim Roberts, 2-6369, Dist. Services)
Prices (add $32 for delivery to MRS):
240 Liters, $117
160 Liters, $78
They need 24hrs notice for Delivery. Best
days are MWF. According to Dave Bowling the laser
will need 20 liters/week of LN2.
MRS Contact: Steve Seibold, 303.492-8841.
Steven.Seibold@Colorado.EDU
- 56: data processing, Site none, Wed 18-Jun-2003 12:19:56 MDT, Data Processing of May Data. (problem)
% the fix for the *.may21.31.03 files:
1. It looked like there were some problems on the afternoon of May
28th. This can be seen in UCfluxes.q:
Flux file time: 03 05 28 jd:148 15:00:00 MDT
U: 0.56262
U-dir: 207.25
u'w' : 0.0045952
u* : 0.079285
z/l : 0.70784
H -9.768
E -2.9021
CO2 344.3
F(CO2) 0.0288
mem = 45.939416
i 367
i = 367Error in "[.its"(x, ii, jj): subscript out of bounds
Dumped
Here are some errors from the log file:
fgrep Error /usr/local/aster/isff/src/sfun/NIWOT/tmp/fluxcalcs.csh.splus.out.18139
Error in qr.resid(z, y): y and qr$qr should have same number of rows
Error in qr.resid(z, y): y and qr$qr should have same number of rows
Using a 6251 - no H2O IRGA dataError in var(w, scalar): missing values in y not allowed
Error in "tspar<-.its"(x, p): tspar must be in increasing order
i = 367Error in "[.its"(x, ii, jj): subscript out of bounds
i = 367Error in "[.its"(x, ii, jj): subscript out of bounds
Error in parse(file = fileinput): can't open source file
Error in parse(file = fileinput): can't open source file
Error in parse(file = fileinput): can't open source file
2. used data_stats to look at the files around here
a bit more closely:
data_stats < /data/projects/NIWOT/raw_data/all/nwt030528.160000
Opened:
# of points start time end time delta time freq
0 8733 16:00:00.762 18:27:01.082 8820.320 0.990
200 88206 16:00:00.098 18:27:01.355 8821.257 9.999
201 88207 16:00:00.070 18:27:01.295 8821.225 9.999
202 8821 16:00:00.674 18:27:00.927 8820.253 1.000
203 8821 16:00:00.823 18:27:01.053 8820.230 1.000
205 8821 16:00:00.961 18:27:01.205 8820.244 1.000
206 50918 16:00:00.080 18:27:01.203 8821.123 5.772
207 8821 16:00:00.697 18:27:00.911 8820.214 1.000
data_stats < /data/projects/NIWOT/raw_data/all/nwt030528.182838
Opened:
# of points start time end time delta time freq
0 641 18:28:38.204 18:39:24.603 646.399 0.990
200 6446 18:28:42.328 18:39:24.951 642.623 10.029
201 6427 18:28:44.340 18:39:24.987 640.647 10.030
202 641 18:28:46.350 18:39:25.021 638.671 1.002
203 638 18:28:48.359 18:39:24.145 635.786 1.002 <---missing chan206!
205 636 18:28:50.369 18:39:24.301 633.932 1.002
207 635 18:28:51.020 18:39:25.003 633.983 1.000
data_stats < /data/projects/NIWOT/raw_data/all/nwt030528.183933
Opened:
# of points start time end time delta time freq
0 38066 18:39:33.625 23:59:59.600 19225.975 1.980 <--- freq is near 2.
200 181829 18:39:39.156 23:59:59.990 19220.834 9.460
201 192241 18:39:35.136 23:59:59.958 19224.822 10.000
202 19223 18:39:35.136 23:59:59.754 19224.617 1.000
203 19226 18:39:35.136 23:59:59.828 19224.691 1.000
205 19221 18:39:35.136 23:59:59.014 19223.879 1.000
206 192199 18:39:39.224 23:59:59.910 19220.686 10.000
207 19223 18:39:35.136 23:59:59.644 19224.508 1.000
since nwt030528.182838 is missing chan206 and it's a short file
I moved that file to my directory...it's now:
611856 May 28 12:39 /home/staff/sburns/nwt030528.182838.problemfile
I can move it back after the processing is done.
3. per andrews suggestion I manually blocked out some times near the
problem time...I did this in Splus as:
a <- dget("/home/staff/aturnip/results/Data.times/DT.may21.31.03")
dim(a)
[1] 528 11
> a[367:369,]
DATA SONIC KR CO2 RH PTOT RNET TEMP CO2.CAL H2O CO2.75
03 05 28 150000.000 T T T T T T T T F T T
03 05 28 153000.000 T T F T T T T T F T T
03 05 28 160000.000 T T F T T T T T F T T
> a[367:369,] <- F
> a[367:369,]
DATA SONIC KR CO2 RH PTOT RNET TEMP CO2.CAL H2O CO2.75
03 05 28 150000.000 F F F F F F F F F F F
03 05 28 153000.000 F F F F F F F F F F F
03 05 28 160000.000 F F F F F F F F F F F
attr(, "class"):
[1] "ats" "its" "Matrix"
dput(a,"/home/staff/aturnip/results/Data.times/DT.may21.31.03")
Did the same thing for PT and WT files..ie,
> a <- dget("/home/staff/aturnip/results/Data.times/PT.may21.31.03")
> a[367:369,] <- F
> dput(a,"/home/staff/aturnip/results/Data.times/PT.may21.31.03")
> b <- dget("/home/staff/aturnip/results/Data.times/WT.may.21.31.03")
> b[367:369,] <- F
> dput(b,"/home/staff/aturnip/results/Data.times/WT.may.21.31.03")
4. after doing this copied fluxcalcs.csh to fluxcalcs_notime.csh...where
I commented out the calls to find the times. Re-ran this. So far there
are no errors:
fgrep Error tmp/fluxcalcs_notime.csh.splus.out.12504
- 51: equipment purchases, Site none, Wed 11-Jun-2003 14:23:01 MDT, Tent Purchase
June 11, 2003.
PUrchased a tent from Dave tents and awnings.
webpage: http://www.davistent.com/
phone: 1-877-elk-camp
Bought a 10'x12' 10oz Wall Tent. with 1 window.
water and mildew treated.
also, bought poles.
location: Jason street near the intersection of I-25 and rt 70.
take 36 south to Pecos St, turn left onto 47th, right onto
Jason st. It's the 2nd building. Hours are M-F, 8-4:30.
- 50: data processing, Site none, Wed 11-Jun-2003 13:17:08 MDT, Logger Data Processing for May, 2003
Wed June 11, 2003
-----------------------------
May Logger Data Processing:
Final "Cleaned Up" Data Files:
1488 1488 115068 /data/projects/NIWOT/raw_data/loggers/CNR_2003_05.csv
44640 44640 1455240 /data/projects/NIWOT/raw_data/loggers/CO2_2003_05.csv
1488 1488 211047 /data/projects/NIWOT/raw_data/loggers/MET_2003_05.csv
1488 1488 513355 /data/projects/NIWOT/raw_data/loggers/MRS_2003_05.csv
1488 1488 106306 /data/projects/NIWOT/raw_data/loggers/PRF_2003_05.csv
8928 8928 801957 /data/projects/NIWOT/raw_data/loggers/TCs_NCAR_2003_05.csv
1488 1488 293166 /data/projects/NIWOT/raw_data/soil.data/SOIL_2003_05.csv
2976 2976 1753091 /data/projects/NIWOT/raw_data/soil.data/TCs_2003_05.csv
Some of these files have data which are averaged down to 1/2 values.
There are now 5-min data available for most of the loggers (error in CNR
program needs to be fixed) and most will be 5-min for June. Soil logger
is set to be 10-min values.
Also, in early May (2nd May) all the logger times were checked and set
to be MST. All these files have the time stamp in MST. The location of
the time stamp (at the end of the data period) was not considered in
processing these data.
- 46: equipment purchases, Site none, Tue 03-Jun-2003 08:00:00 MDT, Order to Airgas
Update on June 23, 2003:
I called to find out the status of our order...it appears
there has been a delay in the shipment. Here's my e-mail
to Ed Barr at Airgas:
Date: Mon, 23 Jun 2003 15:53:57 MDT
To: Ed Barr
cc: sean.burns@Colorado.EDU, aturnip@stripe.colorado.edu
From: "Sean Burns"
Subject: Re: Specialty Gas Order
Hi Ed,
Were both cylinders in the order delayed or just one?
If you can send me an e-mail with any information you get about the
order that would be better than a phone call.
thanks for looking into this...
> I have entered it now and delivery will be in about two weeks. Thanks, Ed
>
> -----Original Message-----
> From: Sean Burns [SMTP:Sean.Burns@Colorado.EDU]
> Sent: Tuesday, June 03, 2003 9:45 AM
> To: Ed Barr
> Cc: sean.burns@Colorado.EDU; aturnip@stripe.colorado.edu;
> bowling@biology.utah.edu
> Subject: Re: Specialty Gas Order
>
>
> Hi Ed,
>
> Thanks for double-checking our order. The people who are going to use
> the 5% co2 in air said it was fine to use the Certified Standard grade
> (~$178 for 80 cu ft) instead of the primary standard.
>
> If there are any other questions please let me know. e-mail works
> best since i'm often out of the office...about how long will it take
> to prepare our order?
>
> thanks!
>
> SpB.
>
>
>
> > Hello Sean, Thanks for the faxed cylinder order today but I have
> a question
> > on item 1 for the 5% CO2 in Air. I thought we had discussed
> price and
> > availability on a Primary Standard grade rather than the
> Certified Standard
> > grade shown on your order. Please confirm the grade again and
> I'll enter
> > the order. Thanks again, Ed
-------------
June 3, 2003.
1. 5% UHP co2 in AIR "certified standard", size 80A
2. "Instrument Grade" pure co2 (4.0 grade), size 80A
AirGas International, Inc
3200 Bluff
Boulder, CO 80301
Phone: 303.442.2481
fax: 303.442.2841
I faxed them an order form.
- 45: site visit, Site none, Mon 02-Jun-2003 16:21:12 MDT, site visit on Monday, June 2 (SpB.)
Monday June 2nd Visit:
----------------------
At the site: SpB.
Purpose of visit: Top level breaker had popped...chan 201 (upper level
sonic and li6262) was all RIPs. Since i was going to be out there
I decided to also download all the logger data from the 26m Tower.
Bought a plug from McGuckins to connect the fan for the li6262 pump
box.
Weather at site: Nice mild day. Some afternoon clouds but no thunder
and lightning.
---------
Misc Notes:
** Creeks are still flowing strongly...
---------
~8:00 AM,
* checked the data from home---noticed that chan 201 was all RIPs so
planned to go up to the site.
~9:00 AM - Drove to site (spb drove).
~10:30 AM
* downloaded cr10x MRS data file to MRS PC and transferred it back to CU, ie:
-rw-rw-r-- 1 sburns 967524 Jun 2 10:44 mrs_030530.dat
(this was the file i downloaded from the logger last Friday)
~11:00 AM - arrived at the site.
* reset the top level breaker. restarted the adam on the quacker...it took
a little while for chan200 (UC logger) and chan202 to start back up again.
It seemed when i polled the chan200 from russter with rserial it started
up again (might not be related).
* restared the li6262 (should be off since it's on the top level power box).
* connected a plug to the wires for the fan which is inside the box of the
li6262 pump. this fan is now plugged in.
* downloaded the following logger data:
-rwxrwxr-x 1 sburns 47980 Jun 2 12:34 cnr6_2.dat*
-rwxrwxr-x 1 sburns 873367 Jun 2 13:07 prf6_2.dat*
-rwxrwxr-x 1 sburns 328 Jun 2 13:07 prf6_2b.dat*
-rwxrwxr-x 1 sburns 491476 Jun 2 13:14 met6_2.dat*
-rwxrwxr-x 1 sburns 131 Jun 2 13:14 met6_2b.dat*
-rwxrwxr-x 1 sburns 782732 Jun 2 13:26 nctc6_2.dat*
-rwxrwxr-x 1 sburns 86 Jun 2 13:26 nctc6_2b.dat*
* noticed that the cnr logger data were still 1/2 hr avgs...tried to
re-upload the program to the logger and it gave the following error:
Error Message from SWF log (pc208) when trying to upload program to CNR logger:
"06/02/03 12:42:47", W 23Xrad *D failed. Check security code.
"06/02/03 12:42:48", W 23Xrad no echo of End command.
need to figure out if this is a logger problem or a programming error.
* looked for the davit at the ncar tower and didn't find it (still some snow there).
* replaced the dessicant in all the campbell boxes at the 26m tower and also
the quacker box---still need to replace dessicant at N Canopy tower (and licor
boxes?).
* found out that flies like the hang out in these boxes!
- 44: data system, Site none, Fri 30-May-2003 08:43:57 MDT, How to re-nice processes (from Gordon)
Date: Thu, 29 May 2003 14:04:27 MDT
To: sean@ucar.edu
From: Gordon Maclean
Subject: renice
# set nice value for adam and sio process:
find PID with: ps -elf
100 S root 8238 1 0 75 0 - 349 schedu 13:32 ? 00:00:00 timeupdate -h russter -t 3600
000 S root 8239 1 0 76 0 - 407 pipe_w 13:32 ? 00:00:00 logger -t start_adam_timeupdate -p local0.info
100 S root 8240 1 0 65 -10 - 369 pipe_w 13:32 ? 00:00:00
adam -h russter
000 S root 8241 1 0 76 0 - 407 pipe_w 13:32 ? 00:00:00
logger -t start_adam -p local0.info
000 S root 8242 8240 0 65 -10 - 338 schedu 13:32 ? 00:00:02 sio
000 S root 8243 8240 0 75 0 - 334 schedu 13:32 ? 00:00:00
heart
100 S root 8244 8240 0 75 0 - 350 schedu 13:32 ? 00:00:00 rserial -h russter
then "renice" the adam and sio processes...
renice -10 8240
renice -10 8242
- 37: bowling, Site none, Wed 21-May-2003 12:35:28 MDT, Talk with Dave Bowling (May 21, 2003)
Date: Wed, 21 May 2003 10:50:27 MDT
To: aturnip@stripe.colorado.edu
cc: sean.burns@Colorado.EDU
From: "Sean Burns"
Subject: Bowling Phone Call...
Hi Andrew,
Dave Bowling called and I talked to him for about 1/2 hour....here our
my notes from our talk (i'll put these in the logbook)...i think you
already know about most all of these:
General:
--------
1. On June 30th we will need extra people to haul Laser and Robot
system out to the field.
2. He wanted to have everything setup and ready for installation prior
to them arriving on the 30th.
3. He is going to mail us a csat sonic this week.
Laser System:
-------------
1. Order a cylinder of 5% Ultra-pure Air + a regulator for this tank
that will allow for low-delivery flow rates (for laser system). In
addition we should have a tank of CO2-free air (not N2!) which they
can use to dilute the Ultra-pure tank. Dave is bringing along 8 cal
cylinders for the system....at any given time 5 cylinders will be
attached to the laser system.
2. Tent---should be near the main tower...best not to have a floor so
they can put supports into the ground. Within the tent will be a PC
to run the laser system...he asked if we can find a table for the PC
and chairs to sit on. Also, since they plan on working at night, a
light for the tent.
3. Big pump for laser (should be about 100' away from the tent since
it is noisy). Need to have a pallate for the pump (for leveling) and
a tarp to keep the rain off of it (need to keep open for cooling).
Probably best to have the exhaust from the pump downhill of the tower.
(note: can't scrub the exahuast since the laser is sensitive to
pressure constrictions at outlet).
4. Liquid Nitrogen. Need about 10L 2 times per week. (might be less
than this). I recall you talked to steve at MRS about the deliveries
going to MRS...was that the plan?
5. Need 2 differential analog inputs on a datalogger for laser
diagnostic signals. The signal is +/- 10V but should be able to work
with a CR-23X (since laser is a campbell instrument).
Robot System:
-------------
1. Robots will be DC powered.
2. Need to select robot sites (E and W of main tower). I think Russ
wants to be in on this, right?
3. Need to get power out to the tower sites.
4. Two Sections of scaffolding tower to mount the robots and keep them
off the ground. A way to get the inlets to treetops (pvc tubing?).
5. We supply 2 tanks of CO2 to go with the robots.
- 36: bowling, Site none, Wed 21-May-2003 12:31:04 MDT, Plan from Dave Bowling (email from April)
Date: Mon, 21 Apr 2003 13:37:32 -0600 (MDT)
From: turnipseed andrew a
To: Sean Burns
Subject: summer plans (fwd)
Sean - just forwarding you some stuff I got today for Bowling et
al. at Utah. Also - talked to Kurt at ATD - he says go for it with
extension cords and battery charger/battery system. He may even have
some long extension cords he could loan us for the summer.
andrew
Andrew A. Turnipseed
EPO Biology
Campus Box 334
Univ. of Colorado, Boulder
303-492-5796
aturnip@colorado.edu
---------- Forwarded message ----------
Date: 21 Apr 2003 12:00:52 -0600
From: Dave Bowling
To: "Monson, Russ" ,
"Schauer, Andy" ,
Dean Andersen ,
"Sargent, Steve" ,
"Turnipseed, Andy" ,
"Bowling, D"
Subject: summer plans
Hi everyone,
We're coming to Colorado in 5 weeks, so we need to get moving. Last
time I posed several questions, and got answers to most things. The
latest version of the summer plans thing is attached. We no longer
plan to interface with the existing profiler system.
There is a proposed deliniation of responsibilities for some tasks
like solar power and structures to mount things on. Andy T and Russ,
please take a look and make sure you can provide everything on the
list under your name (or tell me now if you can't and we'll figure
something else out).
Andy T and Andy S, please coordinate as necessary to make things work
- you'll each need details from the other I'm sure.
Please let me know if you have any questions.
DB
-----------------------------------------------------------------------
(Message inbox:401)
Date: Mon, 21 Apr 2003 13:36:22 MDT
To: Sean Burns
From: turnipseed andrew a
Subject: Re: niwot ridge plan attached (fwd)
---------- Forwarded message ----------
Date: 21 Apr 2003 11:01:12 -0600
From: Andy Schauer
To: turnipseed andrew a
Subject: Re: niwot ridge plan attached
hi andy,
gearing up for the trip here. i have a few uncertainties.
1) you were checking on some sections of tower...do you have a
structure that we can mount these autosamplers to? they are 1 50 lbs
and need to be upright (i have attached photos). whomever will be
servicing them (swapping flasks, changing reagents, etc) will be most
appreciative if they are mounted at lab bench height. in the past we
have used scaffolding tower material , our own frame built out of
unistrut, and sheds. if you do not have anything for mounting, please
let me know so i can plan accordingly.
2) we will need one cylinder for each autosampler of ~400ppm. can you
provide this or give me contact information to a sugge sted source so
i can get the ordering going?
thanks, andy, looking forward to meeting you!
andy
On 1/31/2003 12:07 PM, turnipseed andrew a wrote:
Dave and all
A few comments - also include some comments on Deans reply.
Starting Date ; no problems on end of May - you just may realize you
could be setting up in the snow. Last few years have been dry and
meltoff occurred early. Snow was gone by last days of May. However,
the year we approached average snowpack (1999) - snow lasted into
mid-June.
So far we're at ~70% of average - another dry year, but as Russ keeps
telling me - El Nino is supposed to give us a dry mid-winter and a
wet spring - so its too early to speculate. One other note - I may
be out of town for a long (3-4) day weekend after May 27. But should
be around when everyone first gets here.
On Dean's comment about NCAR coming. No concerns here. Meeting
yesterday concerning the inititiative that funded last fall's
study. No plans to come back this summer as far as I can tell.
Jeilun Sun (who headed the study) just wants to work on data
analysis.
Dave's questions :
(1) Logger program - I'll send that shortly - having 2 offices I
always find that what I need is at the other office.
(2)(3) I have to refresh myself on how many control ports are on a
CR10x (which runs the profiler). We are using 4 to control the
valves. At the very least, you could connect to the 4 control ports
and then use their values (0 or 5V) to deduce the level. Have to
think a bit more about how to synchronize - but can't believe its too
difficult. I'll have to look for the electronics drawings - they
were made by an undergrad who's long gone, but I think we still have
copies of these.
Pressure transients and flow rates. This will be much easier to see
once I find a picture of the flow system - but will try to describe
it anyway. I think Dean is right in that the flow through the main
lines should be kept pretty high so that you don't condense water in
them (especially on high inlets that then lay on the ground going
back to the IRGA). However, the sampling flow rate through the IRGA
could (and probably should) be reduced. It is not a 3-way valve -
the main lines are being continously pumped by a main pump. There
are tees on the main lines that lead to a solenoid mainfold (2-way
valves) which select which level gets sampled to the irga. the main
flows are controlled by rotameters (simply a needle valve) and you
can see the flow drop about 30% when a level is sampled (because now
a second pump is pulling that line as well). Dean said that the
sampling flow rate through the irga was about 1 Lpm - seems awfully
high to me. Seems like we need less of pump on this end and should
flow this around 200-400 sccm - maybe be using the TDL pump. the
downside to slower flow is slower flushing time, but most of the
tubing is (or could be) 1/8" and should flush in just a few seconds
(< 5) even with a much slower sampling flow rate. I would think that
lowering the sampling flow rate should greatly reduce the pressure
transient, because the Irga pressure (~ 580 mbar, from Dean) seems
awfully low relative to what is probably in the main lines/glass
reservoirs (probably closer to ambient - 700 mbar). The profiler on
the CU tower (another independent profiling system - the one you used
Dave) works more like this - it has a sampling flow of ~ 350 sccm and
you don't see really bad pressure transients - its also easier to
match the pressure during zero's and span's as well - you don't have
to pull a high flow rate off of the cylinders.
Sample heights - My profile system on the CU tower has an inlet a 0.5
m and at 1 m. Can send you some of the data from those 2 levels
(plus others) if you wish. But I agree with Dean - the difference
between 1 and 0.5 m is not as high as I would have expected. It sort
of looks like the lowest 5-6 m actually get reasonable well-mixed at
night - probably due to a relatively strong drainage flow along the
ground. There's a sharp drop above 6 m accompanied by a minimum in
wind speed and temperature at that height.
So - I'll try to gather some drawings and logger code and send them
along shortly.
cheers
andrew
On 30 Jan 2003, Dave Bowling wrote:
Hi all,
Here's an updated version of the sampling plan. There is a list
of questions at the end that need to be addressed by you Colorado
people. Please take a look and respond to those questions which
you think you can answer.
There is also a description of details of the profile system that
I got from a few phone calls. Dean and Andy T, please look that
stuff over and correct as necessary.
Russ, let's talk on the phone once you have a chance to look this
over.
Thanks,
Dave
--
Dave Bowling
Dept. of Biology
257 S. 1400 E.
Salt Lake City, UT 84112
(801)-581-2130
bowling@biology.utah.edu
- 34: equipment purchases, Site none, Fri 16-May-2003 16:18:58 MDT, ATI Sonic Dropped Off at ATI.
On Wed May 14th I dropped off the "dead" sonic at ATI.
Gary Zimmerman was not there, but I gave it to Carl (?).
He put it on the rack at the lab there and was not able
to get valid data out of it.
ATI Info:
Applied Technologies, Inc.
1120 Delaware Ave.
Longmont, Colorado 80501
Phone: 303-684-8722
Fax: 303-684-8773
Toll Free: 866-491-8952
E-Mail: sales@apptech.com
- 30: data processing, Site none, Wed 07-May-2003 09:06:43 MDT, Logger Data Processing for April, 2003.
Logger Data Processing for April 2003:
May 7, 2003:
------------
**All the logger data archive has been moved from
/home/staff/sburns/data_loggers_download/ over to /data3/data_logger/
(there is still a link from the old location to the new one).
Final "Cleaned Up" Data Files:
1440 1440 111600 /data/projects/NIWOT/raw_data/loggers/CNR_2003_04.csv
43200 43200 1402137 /data/projects/NIWOT/raw_data/loggers/CO2_2003_04.csv
1440 1440 190355 /data/projects/NIWOT/raw_data/loggers/MET_2003_04.csv
1440 1440 538240 /data/projects/NIWOT/raw_data/loggers/MRS_2003_04.csv
1440 1440 91512 /data/projects/NIWOT/raw_data/loggers/PRF_2003_04.csv
8640 8640 797644 /data/projects/NIWOT/raw_data/loggers/TCs_NCAR_2003_04.csv
1440 1440 116045 /data/projects/NIWOT/raw_data/loggers/UC_2003_04.csv
2880 2880 1488505 /data/projects/NIWOT/raw_data/soil.data//TCs_2003_04.csv
Note: There are no soil flux data from the N. Canopy Tower since that data
logger didn't have any power when I arrived there.
Some of the logger data had problems...these were cleaned up with
matlab mfiles:
-rw-rw-r-- 1 sburns 3555 May 6 13:23 fix_mrs_2003_04.m
-rw-rw-r-- 1 sburns 3866 May 5 17:52 fix_tc23x_april03.m
-rw-rw-r-- 1 sburns 2838 May 6 16:20 fix_uc_2003_04.m
Mostly the problems were due to errors in the time stamp. If there
are 2 data gaps within the time period then it was a bit difficult to
tell when the problem occurred.
The raw or original data files were saved as:
-rw-rw-r-- 1 sburns 256908 Apr 25 15:45 030425b_raw.dat
-rw-rw-r-- 1 sburns 249801 May 5 10:42 030425b_orig.dat
-rwxrwxr-x 1 sburns 1285204 May 2 13:30 tc5_2_orig.dat*
-rwxrwxr-x 1 sburns 168941 May 2 12:58 uc5_2b_orig.dat*
and the "fixed" data files are:
-rw-rw-r-- 1 sburns 266017 May 6 13:29 030425b.dat
-rw-rw-r-- 1 sburns 1422594 May 5 18:24 tc5_2.dat
-rw-rw-r-- 1 sburns 170954 May 6 16:27 uc5_2b.dat
Here's an example of the missing data from the UC data logger
...according to my processing of the UC data the data stopped at:
Missing Data ---- 2003, 4/18 13:00:00 --> 108 1300
.....
Missing Data ---- 2003, 4/25 12:30:00 --> 115 1230
and then came back on-line at:
1682 Data: 2003, 4/25 13:00:00 13:00:00
the 25th is a day we went up to the tower....and the time looks
approximately correct (1pm).
- 24: equipment purchases, Site none, Thu 17-Apr-2003 15:42:48 MDT, Nitrogen from AirGas
Wed, April 16th.
Placed an order for 3 cylinders of Ultra high purity Nitrogen.
AirGas International, Inc
3200 Bluff
Boulder, CO 80301
Phone: 303.442.2481
fax: 303.442.2841
I faxed them an order form.
- 22: equipment purchases, Site none, Fri 11-Apr-2003 10:58:29 MDT, CSMC-1M: 1 Megabyte PCMCIA Card from CR-10X.
Friday, April 11 2003.
Purchased a CSMC-1M PCMCIA Card from Campbell Sci.
Order Number: 129403
Contact: Kim, 435.750.9532
Should take about 2 weeks to get here.
- 21: data processing, Site none, Fri 11-Apr-2003 09:52:08 MDT, Data Processing--Finishing off processing--General Info
Here are the last few steps to finish off the data processing:
fun.monthly() % to make the monthly plots.
1. need to run dirt.q....by "fun.dirt()" in Splus.
(manually edit te dirt.q program....then pick the entire
month when the gui window pops up).
edit the file: dirt.q % update file names and month.
compile with: make .fun.dirt
> fun.dirt(days=28)
2. month.recap.csh --- this does all the combining and
integrates the soil data into the data file...i think the
end result are the: s.2003/s.data.* files.
before doing this edit the files:
(replace with the current datafiles):
-rw-rw-r-- 1 sburns 2025 Mar 11 14:57 /usr/local/aster/isff/src/sfun/NIWOT/data1.txt
-rw-rw-r-- 1 sburns 2025 Mar 11 14:57 /usr/local/aster/isff/src/sfun/NIWOT/data2.txt
-rw-rw-r-- 1 aturnip 2007 Mar 5 11:59 /usr/local/aster/isff/src/sfun/NIWOT/data3.txt
- 20: data processing, Site none, Fri 11-Apr-2003 09:25:39 MDT, March 2003 Data Processing--notes and problems
Some details about the Data Processing for March 2003 data.
SpB.
-------
Note: there was a time gap in the data when the data system was down from about
March 18-24. This is due to a big snowstorm. The logger data seem ok for the
canopy tower data.
From the monthly plots there appeared to be 2 minor problems with the data:
1. Wind speed/dir was artificially being set to zero. (don't recall exactly
why/where this was happening...)..andrew fixed the problem.
2. Rnet from the Q*7.1 was giving some wild numbers (around 4000). This
was due to the covar calculation applying the calibration coefficients
twice. When the data were spiky "light.calculate.q" was being used--this
was ok. with covar data the calculation is done in "met.data.q". ie:
### On May 10, 2002 - switched out REBs radiometers :
if(t1 >= utime("02 may 10 140000") & t1 <= utime("02 dec 01 000000")) {
Rnet <- ifelse(Rnet > 0, Rnet*1.0627*9.22, Rnet*1.0079*11.3)
}
### On DEc. 1, 2002 - switched out REBs radiometers :
if(t1 >= utime("02 dec 01 000000")) {
Rnet <- ifelse(Rnet > 0, Rnet*1.0627*9.35, Rnet*1.0079*11.56)
}
-------
there seemed to be a problem with:
aturnip 13016 Dec 17 16:44 /usr/local/aster/isff/src/sfun/NIWOT/prof.analyze.q
This program was having problems since the sizes of some of the vectors
were not consistent (due to missing data in mid-march)...to fix, i did a
manual running of the program by making the following patch:
> dim(data.file)
[1] 361 21
> dim(Times)
[1] 385 10
> ec.data <- dget(ec.data)
> dim(ec.data)
[1] 385 24
the dimension of the data.file is different than the times file...just keep
going through this program one step at a time:
> time.tag
[1] "03 03 11 jd:070 00:00:00 MST" "03 03 11 jd:070 00:30:00 MST"
[3] "03 03 11 jd:070 01:00:00 MST" "03 03 11 jd:070 01:30:00 MST"
[5] "03 03 11 jd:070 02:00:00 MST" "03 03 11 jd:070 02:30:00 MST"
[7] "03 03 11 jd:070 03:00:00 MST" "03 03 11 jd:070 03:30:00 MST"
[9] "03 03 11 jd:070 04:00:00 MST" "03 03 11 jd:070 04:30:00 MST"
[11] "03 03 11 jd:070 05:00:00 MST" "03 03 11 jd:070 05:30:00 MST"
[13] "03 03 11 jd:070 06:00:00 MST" "03 03 11 jd:070 06:30:00 MST"
...etc, etc...
[367] "03 03 18 jd:077 15:00:00 MST" "03 03 18 jd:077 15:30:00 MST"
[369] "03 03 18 jd:077 16:00:00 MST" "03 03 18 jd:077 16:30:00 MST"
[371] "03 03 18 jd:077 17:00:00 MST" "03 03 18 jd:077 17:30:00 MST"
[373] "03 03 18 jd:077 18:00:00 MST" "03 03 18 jd:077 18:30:00 MST"
[375] "03 03 18 jd:077 19:00:00 MST" "03 03 18 jd:077 19:30:00 MST"
[377] "03 03 18 jd:077 20:00:00 MST" "03 03 18 jd:077 20:30:00 MST"
[379] "03 03 18 jd:077 21:00:00 MST" "03 03 18 jd:077 21:30:00 MST"
[381] "03 03 18 jd:077 22:00:00 MST" "03 03 18 jd:077 22:30:00 MST"
[383] "03 03 18 jd:077 23:00:00 MST" "03 03 18 jd:077 23:30:00 MST"
[385] "03 03 19 jd:078 00:00:00 MST"
so, there is a mis-match between the dimensions of time.tag and
day.time...which one is correct??
> day.time
[,1]
[1,] 0
[2,] 1800
[3,] 3600
[4,] 5400
[5,] 7200
[6,] 9000
[7,] 10800
...etc, etc...
[379,] 75600
[380,] 77400
[381,] 79200
[382,] 81000
[383,] 82800
[384,] 84600
to fix this i changed:
> day.time <- matrix(day.time,48*days,1,byrow=T)
to be:
> day.time <- matrix(day.time,48*days+1,1,byrow=T)
i renamed the program to be: prof.analyze.temp.q
and then recompiled it by:
make prof.analyze.temp.q
-------------------------------------------------------------------------
There were also problems with the next set of 10days (ie, mar.21.31.03).
similar thing:
time.begin
[1] "03 03 24 jd:083 17:00:00 MST"
> time.end
[1] "03 03 31 jd:090 23:30:00 MST"
> length(day.time)
[1] 337
> length(time.tag)
[1] 350
> days
[1] 7
so in prof.analyze.temp.q changed,
day.time <- matrix(day.time,48*days+1,1,byrow=T)
to be,
day.time <- matrix(day.time,48*days+14,1,byrow=T)
now it works by doing:
source("/usr/local/aster/isff/src/sfun/NIWOT/prof.analyze.temp.q")
Warning messages:
assigning "fun.prof.analyze.temp" masks an object of the same name on
database 2
fun.prof.analyze.temp(GRAPH=F)
by the end of all this the number of files is:
dir /home/staff/aturnip/results/*/* | grep mar | grep .03 | grep :
-rw-rw-r-- 1 sburns 22565 Mar 20 14:19 /home/staff/aturnip/results/Data.times/DT.mar01.10.03
-rw-rw-r-- 1 sburns 18171 Mar 29 08:32 /home/staff/aturnip/results/Data.times/DT.mar11.20.03
-rw-rw-r-- 1 sburns 16550 Apr 3 14:41 /home/staff/aturnip/results/Data.times/DT.mar21.31.03
-rw-rw-r-- 1 sburns 21081 Mar 20 14:27 /home/staff/aturnip/results/Data.times/PT.mar01.10.03
-rw-rw-r-- 1 sburns 16978 Mar 29 08:39 /home/staff/aturnip/results/Data.times/PT.mar11.20.03
-rw-rw-r-- 1 sburns 15467 Apr 3 14:46 /home/staff/aturnip/results/Data.times/PT.mar21.31.03
-rw-rw-r-- 1 aturnip 21096 Mar 27 11:49 /home/staff/aturnip/results/Data.times/WT.mar.01.10.03
-rw-rw-r-- 1 sburns 16993 Mar 29 08:45 /home/staff/aturnip/results/Data.times/WT.mar.11.20.03
-rw-rw-r-- 1 sburns 15483 Apr 3 14:52 /home/staff/aturnip/results/Data.times/WT.mar.21.31.03
-rw-rw-r-- 1 sburns 388875 Apr 4 14:01 /home/staff/aturnip/results/bole.needles/tree.storage.mar.03
-rw-rw-r-- 1 aturnip 1711 Mar 27 11:56 /home/staff/aturnip/results/co2.cal/co2.cal.mar.01.10.03
-rw-rw-r-- 1 sburns 3090 Mar 29 09:10 /home/staff/aturnip/results/co2.cal/co2.cal.mar.11.20.03
-rw-rw-r-- 1 sburns 477 Apr 3 14:54 /home/staff/aturnip/results/co2.cal/co2.cal.mar.21.31.03
-rw-rw-r-- 1 aturnip 107231 Mar 27 17:36 /home/staff/aturnip/results/fluxes/fluxes.mar.01.10.03
-rw-rw-r-- 1 sburns 67389 Mar 29 17:49 /home/staff/aturnip/results/fluxes/fluxes.mar.11.20.03
-rw-rw-r-- 1 sburns 66160 Apr 3 03:26 /home/staff/aturnip/results/fluxes/fluxes.mar.21.31.03
-rw-rw-r-- 1 aturnip 55401 Mar 27 14:48 /home/staff/aturnip/results/fluxes/fluxes.mar01.10.03a
-rw-rw-r-- 1 aturnip 52543 Mar 27 17:36 /home/staff/aturnip/results/fluxes/fluxes.mar01.10.03b
-rw-rw-r-- 1 sburns 32115 Mar 29 16:29 /home/staff/aturnip/results/fluxes/fluxes.mar11.20.03a
-rw-rw-r-- 1 sburns 35983 Mar 29 17:49 /home/staff/aturnip/results/fluxes/fluxes.mar11.20.03b
-rw-rw-r-- 1 sburns 35930 Apr 3 23:08 /home/staff/aturnip/results/fluxes/fluxes.mar21.31.03a
-rw-rw-r-- 1 sburns 36269 Apr 3 03:26 /home/staff/aturnip/results/fluxes/fluxes.mar21.31.03b
-rw-rw-r-- 1 sburns 70542 Mar 21 07:28 /home/staff/aturnip/results/fluxes/openco2.mar.01.10.03
-rw-rw-r-- 1 sburns 46005 Mar 30 00:48 /home/staff/aturnip/results/fluxes/openco2.mar.11.20.03
-rw-rw-r-- 1 sburns 44541 Apr 4 06:09 /home/staff/aturnip/results/fluxes/openco2.mar.21.31.03
-rw-rw-r-- 1 sburns 70521 Mar 21 02:07 /home/staff/aturnip/results/heat.flux/ht.flux.mar01.10.03
-rw-rw-r-- 1 sburns 46400 Mar 29 16:11 /home/staff/aturnip/results/heat.flux/ht.flux.mar11.20.03
-rw-rw-r-- 1 sburns 46539 Apr 3 21:38 /home/staff/aturnip/results/heat.flux/ht.flux.mar21.31.03
-rw-rw-r-- 1 sburns 253255 Mar 20 15:17 /home/staff/aturnip/results/met/met.data.30.mar01.10.03
-rw-rw-r-- 1 sburns 195003 Mar 29 09:51 /home/staff/aturnip/results/met/met.data.30.mar11.20.03
-rw-rw-r-- 1 sburns 176202 Apr 3 15:28 /home/staff/aturnip/results/met/met.data.30.mar21.31.03
-rw-rw-r-- 1 sburns 10839 Mar 20 15:01 /home/staff/aturnip/results/precip/precip.mar.01.10.03
-rw-rw-r-- 1 sburns 8449 Mar 29 09:39 /home/staff/aturnip/results/precip/precip.mar.11.20.03
-rw-rw-r-- 1 sburns 7114 Apr 3 15:17 /home/staff/aturnip/results/precip/precip.mar.21.31.03
-rw-rw-r-- 1 sburns 4157 Mar 20 14:44 /home/staff/aturnip/results/profiler/prof.cal.mar01.10.03
-rw-rw-r-- 1 sburns 3163 Mar 29 09:25 /home/staff/aturnip/results/profiler/prof.cal.mar11.20.03
-rw-rw-r-- 1 sburns 2782 Apr 3 15:06 /home/staff/aturnip/results/profiler/prof.cal.mar21.31.03
-rw-rw-r-- 1 sburns 78211 Mar 21 04:35 /home/staff/aturnip/results/profiler/profile.mar01.10.03
-rw-rw-r-- 1 sburns 60220 Mar 29 19:47 /home/staff/aturnip/results/profiler/profile.mar11.20.03
-rw-rw-r-- 1 sburns 52547 Apr 4 00:50 /home/staff/aturnip/results/profiler/profile.mar21.31.03
-rw-rw-r-- 1 aturnip 68570 Mar 28 01:19 /home/staff/aturnip/results/profiler/storage.mar.01.10.03
-rw-rw-r-- 1 sburns 43167 Apr 2 17:52 /home/staff/aturnip/results/profiler/storage.mar.11.20.03
-rw-rw-r-- 1 sburns 29999 Apr 4 13:08 /home/staff/aturnip/results/profiler/storage.mar.21.31.03
-rw-rw-r-- 1 sburns 245653 Apr 4 14:10 /home/staff/aturnip/results/s.2003/s.data.mar.01.10.03
-rw-rw-r-- 1 sburns 205425 Apr 4 14:10 /home/staff/aturnip/results/s.2003/s.data.mar.11.20.03
-rw-rw-r-- 1 sburns 208443 Apr 4 14:10 /home/staff/aturnip/results/s.2003/s.data.mar.21.31.03
-rw-rw-r-- 1 sburns 53118 Apr 4 13:31 /home/staff/aturnip/results/soil/soil.mar.01.10.03
-rw-rw-r-- 1 sburns 51301 Apr 4 13:31 /home/staff/aturnip/results/soil/soil.mar.11.20.03
-rw-rw-r-- 1 sburns 59191 Apr 4 13:31 /home/staff/aturnip/results/soil/soil.mar.21.31.03
-rw-rw-r-- 1 sburns 12073 Mar 20 22:27 /home/staff/aturnip/results/sonic/sonic.flags.mar.01.10.03
-rw-rw-r-- 1 sburns 7955 Mar 29 13:36 /home/staff/aturnip/results/sonic/sonic.flags.mar.11.20.03
-rw-rw-r-- 1 sburns 7972 Apr 3 19:10 /home/staff/aturnip/results/sonic/sonic.flags.mar.21.31.03
-rw-rw-r-- 1 sburns 80122 Mar 20 22:27 /home/staff/aturnip/results/sonic/sonicA.mar.01.10.03
-rw-rw-r-- 1 sburns 52657 Mar 29 13:36 /home/staff/aturnip/results/sonic/sonicA.mar.11.20.03
-rw-rw-r-- 1 sburns 52402 Apr 3 19:10 /home/staff/aturnip/results/sonic/sonicA.mar.21.31.03
-rw-rw-r-- 1 sburns 63613 Mar 20 22:27 /home/staff/aturnip/results/sonic/sonicB.mar.01.10.03
-rw-rw-r-- 1 sburns 41584 Mar 29 13:36 /home/staff/aturnip/results/sonic/sonicB.mar.11.20.03
-rw-rw-r-- 1 sburns 41549 Apr 3 19:10 /home/staff/aturnip/results/sonic/sonicB.mar.21.31.03
-rw-rw-r-- 1 aturnip 60385 Mar 27 23:28 /home/staff/aturnip/results/wind.data/UCsat.mar.01.10.03A
-rw-rw-r-- 1 aturnip 63248 Mar 27 23:28 /home/staff/aturnip/results/wind.data/UCsat.mar.01.10.03B
-rw-rw-r-- 1 sburns 20598 Mar 29 21:56 /home/staff/aturnip/results/wind.data/UCsat.mar.11.20.03A
-rw-rw-r-- 1 sburns 21719 Mar 29 21:56 /home/staff/aturnip/results/wind.data/UCsat.mar.11.20.03B
-rw-rw-r-- 1 sburns 27538 Apr 4 03:28 /home/staff/aturnip/results/wind.data/UCsat.mar.21.31.03A
-rw-rw-r-- 1 sburns 29245 Apr 4 03:28 /home/staff/aturnip/results/wind.data/UCsat.mar.21.31.03B
-rw-rw-r-- 1 sburns 137826 Apr 4 14:11 /home/staff/aturnip/results/wind.data/s.wind.mar.01.10.03A
-rw-rw-r-- 1 sburns 108341 Apr 4 14:11 /home/staff/aturnip/results/wind.data/s.wind.mar.01.10.03B
-rw-rw-r-- 1 sburns 120571 Apr 4 14:12 /home/staff/aturnip/results/wind.data/s.wind.mar.11.20.03A
-rw-rw-r-- 1 sburns 88512 Apr 4 14:12 /home/staff/aturnip/results/wind.data/s.wind.mar.11.20.03B
-rw-rw-r-- 1 sburns 123539 Apr 4 14:12 /home/staff/aturnip/results/wind.data/s.wind.mar.21.31.03A
-rw-rw-r-- 1 sburns 98776 Apr 4 14:12 /home/staff/aturnip/results/wind.data/s.wind.mar.21.31.03B
-rw-rw-r-- 1 aturnip 77967 Mar 28 00:42 /home/staff/aturnip/results/wind.data/wind2.mar.01.10.03
-rw-rw-r-- 1 sburns 60193 Mar 29 22:55 /home/staff/aturnip/results/wind.data/wind2.mar.11.20.03
-rw-rw-r-- 1 sburns 49588 Apr 4 04:15 /home/staff/aturnip/results/wind.data/wind2.mar.21.31.03
dir /home/staff/aturnip/results/*/* | grep mar | grep .03 | grep : | wc
Total number of files = 73.
- 19: data processing, Site none, Thu 03-Apr-2003 09:06:21 MST, Logger Data Processing for March, 2003.
Thursday, April 3, 2003.
note:
------
STill need to download the UC logger data.
Update: Wed, 5/7, 12:09pm:
---------------------------
Created the undercanopy logger data file for march:
128429 May 7 11:57 /data/projects/NIWOT/raw_data/loggers/UC_2003_03.csv
Update: Thur, 4/3, 2:23pm:
---------------------------
discovered that the clock on the 23tc4_1.dat file is screwed
up. (this will be true for next month too, so the clock needs
to be reset!). The problem occurs at:
>> tc1(r_jump(1:10)-2,1:4)
107.00 84.00 1300.00 -3.16
107.00 84.00 1315.00 -2.94
107.00 96.00 1145.00 -2.60
107.00 96.00 1200.00 -2.42
107.00 96.00 1215.00 -2.26
107.00 96.00 1230.00 -2.14
this is when we reset the power on the logger. the problem
was fixed in the program:
~/matlab/m/logger_data/fix_tc23x_march03.m
to do this the time was assumed to be continuous from the
JD84, 1315 time onward. This file has been corrected and the
new file:
1605325 Apr 3 13:33 /data/projects/NIWOT/raw_data/soil.data/TCs_2003_03.csv
created. The end of the file is:
107,90,2345,-0.272,-0.819,-0.585,-3.068,-0.502,-0.427,-0.568,-0.432,-3.113,-1.24,-0.777,-0.355,-1.342,-0.777,-0.781,-0.458,-0.669,-1.33,-2.884,-1.218,-0.917,-0.989,-6999,-6999,-6999,-6999,-0.735,-0.531,-0.571,-0.462,-0.551,-0.379,-0.364,-0.456,-0.418,-0.541,-0.268,-1.25,-0.628,-0.567,-0.5,-0.279,-1.436,-0.442,-1.093,-0.333,-0.686,-0.534,-0.021,0.052,-1.473,-2.24,-0.686,-0.555,-1.28,-0.581,-0.434,-0.546,-0.561,-0.624,-0.668,-0.71,-0.414,-1.207,-0.586,-0.451,-0.601,-1.547,-0.737,-0.531,-1.373,-3.52,-1.223,-0.93,-0.631,-6999,-6999,-6999,-0.227,0
original post:
---------------
files in /data/projects/NIWOT/raw_data/loggers/:
-rw-rw-r-- 1 sburns 113933 Apr 2 11:51 CNR_2003_03.csv
-rw-rw-r-- 1 sburns 1395475 Apr 2 17:59 CO2_2003_03.csv
-rw-rw-r-- 1 sburns 187298 Apr 2 18:10 MET_2003_03.csv
-rw-rw-r-- 1 sburns 557756 Apr 2 14:35 MRS_2003_03.csv
-rw-rw-r-- 1 sburns 99329 Apr 2 14:42 PRF_2003_03.csv
-rw-rw-r-- 1 sburns 839929 Apr 2 18:41 TCs_NCAR_2003_03.csv
files in /data/projects/NIWOT/raw_data/soil.data/:
-rw-rw-r-- 1 sburns 317826 Apr 2 14:06 SOIL_2003_03.csv
-rw-rw-r-- 1 sburns 1472508 Apr 2 13:49 TCs_2003_03.csv
the number of lines for each file:
wc ~/data_loggers_download/*.csv
1488 1488 113933 ~/data_loggers_download/CNR_2003_03.csv
44640 44640 1395475 ~/data_loggers_download/CO2_2003_03.csv
1488 1488 187298 ~/data_loggers_download/MET_2003_03.csv
1488 1488 557756 ~/data_loggers_download/MRS_2003_03.csv
1488 1488 99329 ~/data_loggers_download/PRF_2003_03.csv
1488 1488 317826 ~/data_loggers_download/SOIL_2003_03.csv
2976 2976 1472508 ~/data_loggers_download/TCs_2003_03.csv
8928 8928 839929 ~/data_loggers_download/TCs_NCAR_2003_03.csv
- 18: data system, Site none, Thu 03-Apr-2003 08:57:51 MST, Data System Stopped -- 4:22 am, Thursday April 3rd.
Thursday Morning, April 3rd.
The data system stopped collecting data at 4:22am:
On russter:
-rw-rw-r-- 1 aturnip aster 27413176 Apr 2 17:00 nwt030402.160000
-rw-rw-r-- 1 aturnip aster 27410998 Apr 3 01:00 nwt030403.000000
-rw-rw-r-- 1 aturnip aster 10662982 Apr 3 04:22 nwt030403.080000
-rw-rw-r-- 1 aturnip aster 32768 Apr 3 08:50 nwt030403.154932
the log on russter:
[~] tail /var/adm/messages
Mar 31 06:07:00 russter ntpdate[12037]: adjust time server 128.138.82.228 offset 0.3272636
Mar 31 18:07:01 russter ntpdate[14189]: adjust time server 128.138.82.228 offset 0.3331698
Mar 31 23:27:27 russter inetd[150]: config: 100083/rpc/tcp still active and was not reconfigured.
Apr 1 06:07:01 russter ntpdate[15180]: adjust time server 128.138.82.228 offset 0.3347296
Apr 1 18:07:01 russter ntpdate[16446]: adjust time server 128.138.82.228 offset 0.3410935
Apr 1 23:28:34 russter inetd[150]: config: 100083/rpc/tcp still active and was not reconfigured.
Apr 2 06:07:00 russter ntpdate[17397]: adjust time server 128.138.82.228 offset 0.3410732
Apr 2 18:07:01 russter ntpdate[18347]: adjust time server 128.138.82.228 offset 0.3454047
Apr 2 23:28:51 russter inetd[150]: config: 100083/rpc/tcp still active and was not reconfigured.
Apr 3 06:07:00 russter ntpdate[19307]: adjust time server 128.138.82.228 offset 0.3382631
On quacker:
[cuff@quacker ~]$ tail /var/log/messages
Apr 3 02:01:58 quacker timeupdate[1343]: Adjusted clock 221 milliseconds forward. RPC calls took 4 milliseconds
Apr 3 03:01:57 quacker timeupdate[1343]: Adjusted clock -1601 milliseconds forward. RPC calls took 362 milliseconds
Apr 3 04:01:59 quacker timeupdate[1343]: Adjusted clock 220 milliseconds forward. RPC calls took 4 milliseconds
Apr 3 05:02:00 quacker timeupdate[1343]: Adjusted clock 257 milliseconds forward. RPC calls took 3 milliseconds
Apr 3 06:02:02 quacker timeupdate[1343]: Adjusted clock 279 milliseconds forward. RPC calls took 4 milliseconds
Apr 3 07:02:03 quacker timeupdate[1343]: Adjusted clock 619 milliseconds forward. RPC calls took 4 milliseconds
Apr 3 08:02:04 quacker timeupdate[1343]: Adjusted clock 309 milliseconds forward. RPC calls took 4 milliseconds
Apr 3 08:48:37 quacker sshd[22836]: Accepted password for cuff from 10.0.0.1 port 43155 ssh2
Apr 3 08:48:38 quacker sshd[22838]: Setting tty modes failed: Invalid argument
I don't see anything strange in these logs...so this remains a mystery. It looks
to me like the data system on quacker is going...so, maybe this is a network problem??
- 15: data processing, Site none, Fri 21-Mar-2003 10:06:15 MST, Splus processing of Feb Data.
When I tried to do the monthly plots of the Feb data I was having problems
since not all the data were there....I noticed that I was missing 3 files:
/home/staff/aturnip/results/profiler/storage.feb.01.10.03
/home/staff/aturnip/results/s.2003/s.data.feb.01.10.03
/home/staff/aturnip/results/weekly/weekly.flux.feb.01.10.03
after a little bit of looking around I found that the storage.feb.01.10.03
file was the problem. To create this file it was necessary to run:
fun.prof.analyze(GRAPH=F,MANUAL=T,NAME=1)
in Splus. After doing this and then running:
month.recap.csh
all files existed. There should be 28 files...they are:
-rw-rw-r-- 1 sburns 22565 Feb 18 11:45 /home/staff/aturnip/results/Data.times/DT.feb01.10.03
-rw-rw-r-- 1 sburns 21081 Feb 18 11:38 /home/staff/aturnip/results/Data.times/PT.feb01.10.03
-rw-rw-r-- 1 sburns 21095 Feb 18 11:38 /home/staff/aturnip/results/Data.times/WT.feb.01.10.03
-rw-rw-r-- 1 sburns 15135 Feb 18 11:37 /home/staff/aturnip/results/Data.times/loggers.feb01.10.03
-rw-rw-r-- 1 sburns 4207 Feb 20 14:43 /home/staff/aturnip/results/co2.cal/co2.cal.feb.01.10.03
-rw-rw-r-- 1 sburns 54448 Feb 21 19:21 /home/staff/aturnip/results/fluxes/UCflux.feb.01.10.03a
-rw-rw-r-- 1 sburns 66383 Feb 21 19:22 /home/staff/aturnip/results/fluxes/UCflux.feb.01.10.03b
-rw-rw-r-- 1 aturnip 84313 Mar 13 16:34 /home/staff/aturnip/results/fluxes/fluxes.feb.01.10.03
-rw-rw-r-- 1 sburns 29636 Mar 13 11:44 /home/staff/aturnip/results/fluxes/fluxes.feb01.10.03a
-rw-rw-r-- 1 sburns 55401 Mar 13 16:34 /home/staff/aturnip/results/fluxes/fluxes.feb01.10.03b
-rw-rw-r-- 1 sburns 57952 Feb 21 11:35 /home/staff/aturnip/results/fluxes/openco2.feb.01.10.03
-rw-rw-r-- 1 sburns 59036 Feb 19 02:01 /home/staff/aturnip/results/heat.flux/ht.flux.feb01.10.03
-rw-rw-r-- 1 sburns 183035 Feb 18 16:07 /home/staff/aturnip/results/met/met.data.30.feb01.10.03
-rw-rw-r-- 1 sburns 10873 Feb 18 13:20 /home/staff/aturnip/results/precip/precip.feb.01.10.03
-rw-rw-r-- 1 sburns 3552 Feb 18 13:00 /home/staff/aturnip/results/profiler/prof.cal.feb01.10.03
-rw-rw-r-- 1 sburns 82788 Feb 20 20:28 /home/staff/aturnip/results/profiler/profile.feb01.10.03
-rw-rw-r-- 1 sburns 46952 Mar 20 18:50 /home/staff/aturnip/results/profiler/storage.feb.01.10.03
-rw-rw-r-- 1 sburns 235269 Mar 20 22:38 /home/staff/aturnip/results/s.2003/s.data.feb.01.10.03
-rw-rw-r-- 1 sburns 53371 Mar 11 14:45 /home/staff/aturnip/results/soil/soil.feb.01.10.03
-rw-rw-r-- 1 sburns 10914 Feb 18 22:55 /home/staff/aturnip/results/sonic/sonic.flags.feb.01.10.03
-rw-rw-r-- 1 sburns 73272 Feb 18 22:55 /home/staff/aturnip/results/sonic/sonicA.feb.01.10.03
-rw-rw-r-- 1 sburns 58046 Feb 18 22:55 /home/staff/aturnip/results/sonic/sonicB.feb.01.10.03
-rw-rw-r-- 1 sburns 25036 Mar 20 22:39 /home/staff/aturnip/results/weekly/weekly.flux.feb.01.10.03
-rw-rw-r-- 1 sburns 64701 Feb 21 07:13 /home/staff/aturnip/results/wind.data/UCsat.feb.01.10.03A
-rw-rw-r-- 1 sburns 69587 Feb 21 07:13 /home/staff/aturnip/results/wind.data/UCsat.feb.01.10.03B
-rw-rw-r-- 1 aturnip 141753 Mar 20 22:41 /home/staff/aturnip/results/wind.data/s.wind.feb.01.10.03A
-rw-rw-r-- 1 aturnip 113052 Mar 20 22:41 /home/staff/aturnip/results/wind.data/s.wind.feb.01.10.03B
-rw-rw-r-- 1 sburns 78972 Feb 21 09:19 /home/staff/aturnip/results/wind.data/wind2.feb.01.10.03
- 13: data processing, Site none, Tue 18-Mar-2003 16:04:23 MST, Logger Data Processing for Feb., 2003
Tuesday 3/18/2003.
Logger data file organization:
The files in /data/projects/NIWOT/raw_data/loggers/ are:
-rw-rw-r-- 1 sburns 102581 Mar 18 12:42 CNR_2003_02.csv
-rw-rw-r-- 1 sburns 1295139 Mar 11 15:47 CO2_2003_02.csv
-rw-rw-r-- 1 sburns 177049 Mar 18 12:52 MET_2003_02.csv
-rw-rw-r-- 1 sburns 457386 Mar 13 14:11 MRS_2003_02.csv
-rw-rw-r-- 1 sburns 95101 Mar 11 13:37 PRF_2003_02.csv
-rw-rw-r-- 1 sburns 508614 Mar 18 13:45 TCs_NCAR_2003_02.csv
-rw-rw-r-- 1 sburns 122516 Mar 18 13:00 UC_2003_02.csv
The files in /data/projects/NIWOT/raw_data/soil.data/ are:
-rw-rw-r-- 1 sburns 291598 Mar 11 12:50 SOIL_2003_02.csv
-rw-rw-r-- 1 sburns 1452335 Mar 11 16:42 TCs_2003_02.csv
Here are the number of lines in each file:
1344 1344 102581 CNR_2003_02.csv
40320 40320 1295139 CO2_2003_02.csv
1344 1344 177049 MET_2003_02.csv
1344 1344 457386 MRS_2003_02.csv
1344 1344 95101 PRF_2003_02.csv
1344 1344 291598 SOIL_2003_02.csv
2688 2688 1452335 TCs_2003_02.csv
8059 8059 508614 TCs_NCAR_2003_02.csv
1344 1344 122516 UC_2003_02.csv
(note: i just noticed that TCs_NCAR_2003_02.csv is missing a few values
at the start of the file...)
3/20--updated the file:
508913 Mar 18 16:54 /data/projects/NIWOT/raw_data/loggers/TCs_NCAR_2003_02.csv
8064 8064 508913 TCs_NCAR_2003_02.csv
- 10: site visit, Site none, Mon 10-Mar-2003 08:20:46 MST, Site Visit on Friday, Mar 7th (T-seed & SpB).
At the site : T-seed and SpB.
Purpose of visit: Download loggers, reattach control cable for co2 EC system.
Weather at site: fairly windy, clear skies, not very cold (around freezing).
fairly deep snow drifts, ~ mid-thigh depth (had to dig out trailer door).
---------
~9:00 AM - met at CU to drive to site (Andrew drove).
11:00 AM -
* tried to download the campbell pc card data using the computer at MRS.
This did not work and it appeared the card was corrupted. Here's the
e-mail from Andrew to MRS Andy (note: Andy was not there):
Date: Fri, 07 Mar 2003 17:04:30 MST
To: Andy OReilly
cc: Mark Losleben , Sean Burns
From: turnipseed andrew a
Subject: Card data
Andy
Tried downloading the data from one of the PC cards in you lab on Friday.
However, it kept giving me "card corrupted" messages. Mark looked in and
thought it didn't look too good. It appeared that the desktop was trying
to retrieve data from the card - but it was going through the entire card
very slowly. I left it while it was trying to retrieve data and was
planning to drop back by MRS in the afternoon and see how if finished.
However, when we got down - Marr lab was locked up and I don't know the
door combo (I thought I did - but obviously it must have changed). So
computer may still be connected to the card reader.
Mark also gave another card which is now in the field archivng (we hope)
data. The one that may corrupted was the first card we put in it (in
January). We had switched with another card a few weeks ago. We
replaced that card with Mark's today (Friday, Mar 7th). So sometime we
may need to come and try to download this second card and see if things
are working. (In the next week or so - it will probably have to be Sean to
come). Anyway, if you get a chance - see if the system downloaded
anything off of the card that's in the card reader (a green card). I
tried to save it to a file in MRC_turnip (I think the names was
030703.dat). Let me know if it did anything - also we'll figure out when
we can come and try this other card. thanks
andrew
Andrew A. Turnipseed
EPO Biology
* the N2 and CO_2 tanks at the tower base seemed ok (should start recording
tank pressures).
* Downloaded the logger data from the 3 data loggers at the North Canopy
Access Tower. (Note: we left the power cord connected and just stuffed it
into the tower tubing)
* Downloaded the logger data from the 2 lowest data loggers at the 26m tower.
The "met" logger did not have much data since Andrew had downloaded it last
week. The CNR DL at around 24m was not downloaded (too windy).
* Re-attached the control cable for the co2 eddycorrelation system
(LiCor 6262). The controls for the Li6262 are done by the "Met" data
logger (lowest logger). Andrew mentioned that using the fast data logger
to control the EC system did not work very well.
* Removed the lowest T/RH sensor (~2m) to replace with the new sensor. The
instrument is at the trailer and Andrew showed me how to make a new connector
for it. (I plan to go up next week and finish this).
The files downloaded from the loggers are:
North Canopy Tower:
-rw-r--r-- 1 sburns 275444 Mar 7 12:25 23XA_3_7.DAT
-rw-r--r-- 1 sburns 1551574 Mar 7 12:16 23XTCS_3.DAT
-rw-r--r-- 1 sburns 192190 Mar 7 12:00 CR10X3_7.DAT
26m Tower:
-rw-r--r-- 1 sburns 49331 Mar 7 12:50 MET3_7.DAT
-rw-r--r-- 1 sburns 994978 Mar 7 13:05 PRF3_7.DAT
-rw-r--r-- 1 sburns 136929 Mar 7 13:08 PRF3_7B.DAT
- 9: equipment purchases, Site none, Fri 28-Feb-2003 12:33:37 MST, Purchase Bulkhead Fittings/Nuts/Ferrules from Denver Valve
Denver Valve and Fittings: 303.232.8844
po box 150639--950 Simms St.
lakewood, colorado 80215.
3/8" -600 Sets 10 SS (stainless steel). (2xSS-600-Sets-10) (called a Ferrule-Pak)
3/8" - nuts --> (20 x SS -602-1)
3/8" Bulkhead Fittings/Unions --> (14 x SS-600-61)
(talked to christy...note: you should get a discount so make sure to mention
this).
These are supposed to arrive on Monday (March 3).
(I didn't get a total price...but it's probably around $300).
- 8: data processing, Site none, Fri 28-Feb-2003 12:14:56 MST, Logger *csv Data Files for January, 2003
Created the following csv data files from the data loggers:
(note: these are the data directly downloaded from the loggers
in the field--they are typically averaged down data).
The files created are:
specialk:/home/staff/sburns>dir /home/staff/aturnip/results/loggers/*.csv | grep burn
-rw-rw-r-- 1 sburns 113269 Feb 26 13:51 /home/staff/aturnip/results/loggers/CNR_2003_01.csv
-rw-rw-r-- 1 sburns 1384972 Feb 26 17:26 /home/staff/aturnip/results/loggers/CO2_2003_01.csv
-rw-rw-r-- 1 sburns 196626 Feb 26 14:01 /home/staff/aturnip/results/loggers/MET_2003_01.csv
-rw-rw-r-- 1 sburns 442591 Feb 26 12:33 /home/staff/aturnip/results/loggers/MRS_2003_01.csv
-rw-rw-r-- 1 sburns 102645 Feb 26 13:38 /home/staff/aturnip/results/loggers/PRF_2003_01.csv
-rw-rw-r-- 1 sburns 322306 Feb 26 17:04 /home/staff/aturnip/results/loggers/SOIL_2003_01.csv
-rw-rw-r-- 1 sburns 1625270 Feb 28 10:43 /home/staff/aturnip/results/loggers/TCs_2003_01.csv
-rw-rw-r-- 1 sburns 752129 Feb 28 11:36 /home/staff/aturnip/results/loggers/TCs_NCAR_2003_01.csv
Each file covers all the data from the month of January, 2003. There were a
couple of files I wasn't sure what to do with...these are:
rw-rw-r-- 1 sburns 141364 Jan 9 15:52 /home/staff/sburns/data_loggers_download/23UC1_9.DAT
-rw-rw-r-- 1 sburns 343106 Jan 9 15:44 /home/staff/sburns/data_loggers_download/CR10X1.DAT
the 23UC1_9.DAT file is from the mini-tower data logger..data from this
logger have not been downloaded recently.
I'm not sure what the "CR10X1.DAT" file is...the julian date with the file is
not from January.
- 4: To Do List, Site none, Tue 11-Feb-2003 15:54:31 MST, To Do List from Feb 11, 2003.
Here is a list of items which Andy and I talked about:
Immediate Needs:
-----------------
At the tower :
Most Important :
(1) Download tower data loggers (Bill may have done this)
(2) Try loopback test on the quacker
(3) Check out the Kr hygrometer - is it hooked up properly. (at ~24m)
(4) Switch PC-card in the MRStemp logger. Try to download data from old card.
Secondary Importance:
---------------------
(1) Calibrate the other CO2 standard at the trailer. [still have 2-3 months
since the tank at the tower was full from last visit].
(2) Change filters on the profile system
(3) Change filters on the Li6262 EC system.
For Double Profiler :
(1) Buy new pump (big pump to continously pump the lines - check with tony and see what he ordered last summer). Gast Model #RAA-V210-EB (T-seed)
(2) Replumb the inlet lines at the shack.
a) Put in bulkhead inlet with 3/8" bulkhead fittings
b) make lines from bulkheads to glass volumes out of Dekabon.
c) makes lines from glass volumes to solenoid manifolds out of Dekabon
(3) Need to order : 3/8" bulkhead fittings (14 or more) + some extra 3/8" ferrules and nuts. [SpB, order from Denver valve]
(4) will probably need to change the inlet filters in the spring.
Stuff to order:
---------------
(1) new HMP45D Rel.Hum/Temp. sensor - need to ask : am replacing an HMP35D - will new one fit in the same housing??? [SpB.]
(2) Gast pump for EC system. Model 1531.
Can ask about repairing our old one - has a broken insert plate (part # AG293)
(also buy a "Service Kit" - only about $25.00)
[according to Dean this is not worth reparing].
(3) Get ATI sonic fixed. Make some plots of v-axis (vs. CSAT-3) from last summer to show them. [T-seed]
(4) Send back propvane upstairs - had problem of suddenly not outputting analog signals, although it had power and good cables. Could have been grounding problem. Also, needed recalibration. [T-seed]
(5) Send back Li7500 to have chopper blades painted. [T-seed]
Computer Stuff:
--------------
(1) Buy new hard drive for urquell (backup drive)
[we decided that a 80Gb Drive for specialk might be a better thing to do].
Processing stuff:
----------------
(1) make ASCI outputs from Splus functions (in batchcode) so Sean can use in MatLab.
(2) get Matlab for the workstations. [working on this...]
(3) get Linux and put it on Sean's PC. [SpB.]
Stuff for Sean to know how to do:
--------------------------------
(1) Get Sean to run batch codes
(2) get Sean to run weekly/monthly code.
(3) put in soil data - from loggers to S+
(4) put in logger backup data. [uses excel on PC].
(5) show him some Campbell logger code - how to do it.
--to run here we need to bring the translator box back from the trailer
--one idea: change some of the code on quacker ch201 from "L" to "H"
resolution...also, update quacker:200 to use "campbell_binary".
--some additional S-plus programs to try: "co2.fluxes2.q" and "sonic.tests.q"
- 1: LOG, Site none, Wed 29-Jan-2003 11:31:22 MST, Logbook created
initial log file /usr/local/aster/projects/NIWOT/logbook/tklog.log created by USER sburns